Batch PRs #173, #175, #156, #158, #152 - #212

Merged

Psy-Fer merged 15 commits into

mainfrom

batch/solo-counting

Aug 6, 2026

Commits on Aug 6, 2026

fix(solo): MultiGeneUMI_CR gives a tied UMI to nobody, not to everybody

authored and
Psy-Fer
committed
e0a9eb5
docs(changelog): record the MultiGeneUMI_CR tie fix

authored and
Psy-Fer
committed
bf3d6e7
fix(solo): MultiGeneUMI_CR decides ownership on corrected UMIs

authored and
Psy-Fer
committed
7bde77b
docs(divergence): drop a reference to a test that no longer exists
Psy-Fer
committed
bec5afa
feat(solo): bit-exact libc++ mt19937, generate_canonical and discrete_distribution

authored and
Psy-Fer
committed
2a8722f
feat(solo): EmptyDrops_CR uses Simple Good-Turing and libc++'s sampler

BenjaminDEMAILLE
authored and
Psy-Fer
committed
dde21c0
docs: record the EmptyDrops SGT divergence in DIVERGENCE.md

BenjaminDEMAILLE
authored and
Psy-Fer
committed
ff8d889
docs(divergence): file the EmptyDrops entry under section 1, note the
Psy-Fer
committed
d6d5c79
fix(params): refuse MultiGeneUMI_CR without --soloUMIdedup 1MM_CR
Psy-Fer
committed
6cff455
feat(solo): --soloFeatures Transcript3p, with --soloClusterCBfile

BenjaminDEMAILLE
authored and
Psy-Fer
committed
83cdca0
refactor(solo): drop Transcript3pAcc::merge, which nothing calls

BenjaminDEMAILLE
authored and
Psy-Fer
committed
9ac9757
docs(solo): note that STAR marks Transcript3p under development

BenjaminDEMAILLE
authored and
Psy-Fer
committed
7b19976
fix(solo): implement MultiGeneUMI_All instead of aliasing it to MultiGeneUMI

authored and
Psy-Fer
committed
6959ef4
docs(changelog): record the MultiGeneUMI_All fix

authored and
Psy-Fer
committed
4cb4744
docs(divergence): correct the MultiGeneUMI_All entry, defer the
Psy-Fer
committed
d9d33b9

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Batch PRs #173, #175, #156, #158, #152 - #212

Batch PRs #173, #175, #156, #158, #152#212
Psy-Fer merged 15 commits into
mainfrom
batch/solo-counting

Commits on Aug 6, 2026

fix(solo): MultiGeneUMI_CR gives a tied UMI to nobody, not to everybody

docs(changelog): record the MultiGeneUMI_CR tie fix

fix(solo): MultiGeneUMI_CR decides ownership on corrected UMIs

docs(divergence): drop a reference to a test that no longer exists

feat(solo): bit-exact libc++ mt19937, generate_canonical and discrete_distribution

feat(solo): EmptyDrops_CR uses Simple Good-Turing and libc++'s sampler

docs: record the EmptyDrops SGT divergence in DIVERGENCE.md

docs(divergence): file the EmptyDrops entry under section 1, note the

fix(params): refuse MultiGeneUMI_CR without --soloUMIdedup 1MM_CR

feat(solo): --soloFeatures Transcript3p, with --soloClusterCBfile

refactor(solo): drop Transcript3pAcc::merge, which nothing calls

docs(solo): note that STAR marks Transcript3p under development

fix(solo): implement MultiGeneUMI_All instead of aliasing it to MultiGeneUMI

docs(changelog): record the MultiGeneUMI_All fix

docs(divergence): correct the MultiGeneUMI_All entry, defer the