solo: metrics_summary.csv under the CellRanger layout (stacked on #178) - #179

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BenjaminDEMAILLE wants to merge 11 commits into

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BenjaminDEMAILLE:bd/solo-cellranger-metrics

Commits on Aug 26, 2026

fix(solo): MultiGeneUMI_CR gives a tied UMI to nobody, not to everybody

BenjaminDEMAILLE
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claude
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ad42ddd
feat(solo): --soloOutRawBarcodes Observed, for a CellRanger-shaped raw matrix

BenjaminDEMAILLE
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claude
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73373d2
fix(solo): MultiGeneUMI_CR decides ownership on corrected UMIs

BenjaminDEMAILLE
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claude
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8db2cd0
feat(solo): CellRanger behaviour by default on 10x geometry

BenjaminDEMAILLE
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622bd72
docs(divergence): correct the CellRanger gap figure in 1.3

BenjaminDEMAILLE
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392a546
docs(divergence): restore the measured CellRanger gap in 1.3

BenjaminDEMAILLE
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34a9a7d
feat(solo): --soloOutLayout CellRanger, CellRanger's output shape

BenjaminDEMAILLE
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claude
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5602a3a
feat(solo): metrics_summary.csv under the CellRanger layout

BenjaminDEMAILLE
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claude
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0bd7479
docs(divergence): pin down what differs in Sequencing Saturation

BenjaminDEMAILLE
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cd561d4
fix(solo): the transcriptome metric followed Gene, not the feature written

BenjaminDEMAILLE
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claude
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9248091
fix(solo): carry the CellRanger-default guard through the rebase
BenjaminDEMAILLE
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1cbdf8c