solo: --soloOutLayout CellRanger, CellRanger's output shape (changes output paths on 10x, stacked on #176) - #178

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BenjaminDEMAILLE wants to merge 9 commits into

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BenjaminDEMAILLE:bd/solo-cellranger-layout

Commits on Aug 26, 2026

fix(solo): MultiGeneUMI_CR gives a tied UMI to nobody, not to everybody

BenjaminDEMAILLE
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claude
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ccf034d
docs(changelog): record the MultiGeneUMI_CR tie fix

BenjaminDEMAILLE
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claude
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4f26425
feat(solo): --soloOutRawBarcodes Observed, for a CellRanger-shaped raw matrix

BenjaminDEMAILLE
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claude
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64f4d28
fix(solo): MultiGeneUMI_CR decides ownership on corrected UMIs

BenjaminDEMAILLE
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claude
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22d314d
feat(solo): CellRanger behaviour by default on 10x geometry

BenjaminDEMAILLE
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claude
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29af1c3
docs(divergence): correct the CellRanger gap figure in 1.3

BenjaminDEMAILLE
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claude
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354b64f
docs(divergence): restore the measured CellRanger gap in 1.3

BenjaminDEMAILLE
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claude
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f03b4c8
feat(solo): --soloOutLayout CellRanger, CellRanger's output shape

BenjaminDEMAILLE
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claude
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038cd2d
fix(solo): clean the rebase and carry the CellRanger-default guard
BenjaminDEMAILLE
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2e92b44