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clip: CellRanger4 3' poly-A trim
- #148
#148
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BenjaminDEMAILLE
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clip: CellRanger4 3' poly-A trim
#148
BenjaminDEMAILLE
wants to merge 8 commits into
scverse:main
scverse/rustar-aligner:main
from
BenjaminDEMAILLE:bd/clip-cellranger4
BenjaminDEMAILLE/rustar-aligner:bd/clip-cellranger4
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Commits
Commits on Aug 26, 2026
feat(swalign): in-tree affine-gap aligner, and the CellRanger4 clip built on it
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feat(clip): --clipAdapterType CellRanger4 now actually clips
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docs: changelog for CellRanger4 clipping
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test(swalign): differential harness that every backend has to pass
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feat(swalign): NEON backend, checked against the scalar path on every case
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test(swalign): check every backend this machine can run, not just the detected one
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refactor(clip): drop the in-tree SW engine, keep the poly-A trim
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test(clip): end-to-end test for --clipAdapterType CellRanger4
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