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perf(build): enable geometric LCP memoization for genome indexing (#228)
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chore(lint): fix clippy 1.98 pedantic lints on the CI toolchain (#236)
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cli parity #147 with fixes (#216)
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Batch PRs #167 and #185 (#215)
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Batch PRs #173, #175, #156, #158, #152 (#212)
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chore(deps): bump anyhow from 1.0.103 to 1.0.104 (#194)
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chore(deps): bump docker/metadata-action from 6.1.0 to 6.2.0 (#193)
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chore(deps): bump thiserror from 2.0.18 to 2.0.19 (#192)
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chore(deps): bump actions/checkout from 7.0.0 to 7.0.1 (#191)
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Batch PRs #166, #170, #171, #157, #159 (#200)
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chore(deps): bump docker/login-action from 4.5.1 to 4.6.0 (#189)
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chore(deps): bump rustc-hash from 2.1.2 to 2.1.3 (#190)
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chore(deps): bump bitflags from 2.12.1 to 2.13.1 (#188)
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chore(deps): bump actions/setup-node from 6 to 7 (#187)
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Docs/contributing and divergence (#154)
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STAR-compat batch (--alignEndsType, --outSAMorder, chimeric/transcrip…
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Solo halfmapped softclip (#142)
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fix: check too many loci after the quality filter, matching STAR's (#…
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chore(deps): bump docker/login-action from 4.2.0 to 4.5.1 (#104)
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chore(deps): bump docker/build-push-action from 7.2.0 to 7.3.0 (#102)
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chore(deps): bump docker/setup-buildx-action from 4.1.0 to 4.2.0 (#103)
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chore(deps): bump rust-lang/crates-io-auth-action from 1.0.4 to 1.0.5…
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supersedes/closes #99, #129, #130, #131 with no duplicate dep (#140)
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feat: drop rand for in-tree splitmix64 (src/rng.rs). Empirically (#139)
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Pe overlap consolidation (#138)
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