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KeyError with Syri

Status: Open.

#310 In schneebergerlab/syri;

· jueda99 opened on May 7, 2026

running for several days and no results

Status: Open.

#309 In schneebergerlab/syri;

· arielamadio opened on Apr 9, 2026

Error: For contig refchr13 no matching contig was found. This could be a result of incorrect assembly or extensive repeats or refchr13 could be a novel region. Pseudo-genome cannot be generated. Try removing this contig.

Status: Open.

#304 In schneebergerlab/syri;

· MarvinCtheW opened on Dec 2, 2025

Multi-species alignment construction

Status: Open.

#303 In schneebergerlab/syri;

· zuodabin opened on Nov 12, 2025

unexpected cigar string error

Status: Open.

#298 In schneebergerlab/syri;

· Overcraft90 opened on Sep 21, 2025

Should HDR regions be considered haplotype-specific?

Status: Open.

#297 In schneebergerlab/syri;

· PaoloCallipo00 opened on Aug 18, 2025

Error - Reading Coords - WARNING - Chromosomes IDs do not match. Unequal number of chromosomes in the genomes.

Status: Open.

#295 In schneebergerlab/syri;

· desmodus1984 opened on Jul 31, 2025

Variants in overlapping SYNALs break downstream tools

Status: Open.

#294 In schneebergerlab/syri;

· lrauschning opened on Jul 23, 2025

how to run the tool agains multiple inputs

Status: Open.

#293 In schneebergerlab/syri;

· Overcraft90 opened on Jun 23, 2025

Error in finding SNPs using show-snps

Status: Open.

#291 In schneebergerlab/syri;

· shiyi-pan opened on Jun 22, 2025

Questions about diploid assembly vs. haploid reference genome analysis

Status: Open.

#290 In schneebergerlab/syri;

· Tiffany-zmt opened on Jun 8, 2025

syri stopped running for wheat genome

Status: Open.

#285 In schneebergerlab/syri;

· YouQing06 opened on Mar 3, 2025