Skip to content

is the tree built from bionj_tree.R tree/distances.phylip tree/tree.newick a phylogeny or cladogram?? #8

Description

@limin321

Hi

I use fastANI distance matrix, first converted to fastani.phylip using following code,

pairwise_identities_to_distance_matrix.py --max_dist 0.2 tree/fastani_output > tree/fastani.phylip

then creates a tree with

bionj_tree.R tree/distances.phylip tree/tree.newic

could this tree be considered as phylogenetic tree or just cladogram?? because the original data fastANI pairwise distance values.

Thank you so much for any help?

Best,
Limin

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions