Medical Image Segmentation

Initiating the environment

python -m venv med

1. install requirements.txt

Files

Scripts

• initiate.txt :- contain code to connect to kaggle api and download dataset.

Notebooks

• Load_data.ipynb :- Download data
• eda_hubmap_hpa.ipynb :- Eda of dataset with observation and correlation found in dataset.
• hubmap_hpa_train.ipynb :- to train model using monai ( medical open source library ) and pytorch lightnight (faster and simpler to implement pytorch ).