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Model-selection blog series: in silico study of 5UTR translation model selection; manuscript and reproduction migration in progress

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Model selection for 5UTR translation experiments

Standalone study repository, migrated from the model-selection article series.

Status

The original measurements and code are imported. A LaTeX manuscript reporting these existing results is in paper/main.tex, with the compiled PDF at paper/build/main.pdf. Rebuild it with make paper-imported (system Python and local TeX Live only; it formats archived metrics and compiles, and runs no experiment, data download or environment creation). Provenance for the manuscript is in evidence/paper-migration/: claims ledger, content-coverage map, build receipt, independent AI review and status.

Independent reproduction is pending: protocol.md records the imported-study status; the new harness execution remains unapproved. The generic harness configuration must not be used to claim verified results. Follow the companion README for the original runnable workflow. No new experiment, human approval, human review or independent reproduction is claimed by this migration.

The repository will hold the detailed methods and paper; the blog will provide a shorter accessible explanation. Original third-party licences and notices remain applicable; no blanket relicensing is applied.

Maintenance validation

Run make test for companion regression tests and archive integrity checks. PR CI runs these checks; it does not retrain models or establish scientific reproduction. The repository audit records scope and limitations. Maintained companion code includes safeguards added after the historical run; the original downloadable code and results archives remain unchanged.

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Model-selection blog series: in silico study of 5UTR translation model selection; manuscript and reproduction migration in progress

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