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Model-selection blog series: in silico study of rhodopsin wavelength model selection; manuscript and reproduction migration in progress

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Rhodopsin wavelength model selection

Standalone study repository, migrated from the model-selection article series.

Status

The original measurements and code are imported. The historical-evidence manuscript and PDF are complete; independent scientific reproduction remains pending. The generic harness configuration is unconfigured and must not be used to claim verified results. Follow the companion README for the original runnable workflow. No new experiment, human approval, or independent reproduction is claimed by this migration.

The repository holds the detailed research article, methods and paper. The blog provides the accessible explanation; its replacement is prepared separately from this preservation commit. Original third-party licences and notices remain applicable; no blanket relicensing is applied.

Validation and paper build

Run make setup followed by make test for the maintained companion checks. These synthetic tests do not reproduce the scientific panel. Optional tests clearly skip when pinned data or completed-run files are absent.

make paper requires Python 3.11 (managed by uv), pdfLaTeX and BibTeX. It verifies the preserved evidence, regenerates numerical tables and the historical claim ledger, and builds paper/build/main.pdf. The checked-in PDF and receipt record a clean source snapshot and the actual TeX engine versions. This formatting build does not download data, generate embeddings, fit models or rerun the exploratory analysis. Original publication archives remain unchanged; use companion/README.md for maintained code.

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Model-selection blog series: in silico study of rhodopsin wavelength model selection; manuscript and reproduction migration in progress

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