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Improve `Geometry` class and fix CAD functions in `psydac.cad` - #527

Merged

yguclu merged 140 commits into

develfrom

yguclu-improve-Geometry

Oct 19, 2026

Merged

Improve `Geometry` class and fix CAD functions in `psydac.cad`#527
yguclu merged 140 commits into
develfrom
yguclu-improve-Geometry

Commits on Sep 18, 2025
- Allow `mpi_dims_mask` with geometry file
  yguclu
  authored
  461ae4e
Commits on Sep 19, 2025
- unit test for mpi_dims_mask
  Alisa Kirkinskaia
  committed
  1e46072
- Update test_geometry.py
  yguclu
  authored
  3376e31
- Update geometry.py
  yguclu
  authored
  2704716
- Update test_geometry.py
  yguclu
  authored
  e1a13f8
Commits on Sep 24, 2025
- new tests for class Geometry
  Alisa Kirkinskaia
  committed
  51a32da
- run only my tests
  Alisa Kirkinskaia
  committed
  505db31
- run only my tests
  Alisa Kirkinskaia
  committed
  39c51a4
- run only my tests
  Alisa Kirkinskaia
  committed
  34e42e6
- run only my tests
  Alisa Kirkinskaia
  committed
  90553f9
- run only my tests
  Alisa Kirkinskaia
  committed
  243d2b1
- run only my tests
  Alisa Kirkinskaia
  committed
  9bfda59
- fixed failing tests due to deleting file in parallel
  Alisa Kirkinskaia
  committed
  f75df55
- revert files
  Alisa Kirkinskaia
  committed
  2a7bb4d
Commits on Sep 26, 2025
- Merge branch 'devel' into yguclu-fix-mpi_dims_mask
  alisa-kirkinskaia
  authored
  659831d
Commits on Sep 30, 2025
- Avoid function check_decomposition in tests
  yguclu
  authored
  e7b6bfb
- Fix typo in test_geometry.py
  yguclu
  authored
  f6afb54
- Improve Geometry class:
  yguclu
  committed
  81b1c6d
- Update Geometry unit tests
  yguclu
  committed
  e3c30db
Commits on Oct 1, 2025
- Squashed commit of the following:
  yguclu
  committed
  8716dcb
- Do not create __psydac__ directory in parallel
  yguclu
  committed
  7111b8e
- Use Geometry.from_file in discretize_domain
  yguclu
  committed
  cc097a3
- Use correct parameter name (periods) in MultiPatchDomainDecomposition constructor
  yguclu
  committed
  cd925fb
Commits on Oct 7, 2025
- Add mandatory parameter pdim to Geometry.__init__
  yguclu
  committed
  f1b6bb1
- Clean up Geometry.read()
  yguclu
  committed
  2716065
- Remove unused property is_parallel from Geometry
  yguclu
  committed
  818be2a
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  31fbb37
Commits on Oct 8, 2025
- Clean up module psydac.mapping.discrete_gallery:
  yguclu
  committed
  cb8ccb5
Commits on Oct 21, 2025
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  f47163e
- Run fewer tests, only on Ubuntu with Python 3.11
  yguclu
  committed
  2e56b10
Commits on Jan 26, 2026
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  2511593
- Reactivate single-process tests on Ubuntu and macOS
  yguclu
  committed
  b042a0a
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  0e6a9d6
Commits on Jan 27, 2026
- Remove duplicated imports from test_geometry.py
  yguclu
  committed
  6b6653f
- Improve docstring of Geometry class
  yguclu
  committed
  8ea76a8
- Add 'h5py' xdist_group to all unit tests in test_geometry.py
  yguclu
  committed
  739aee8
- Handle NumPy integers passed in ncells to Geometry constructor
  yguclu
  committed
  66205e7
- Minor cleanup in Geometry constructor
  yguclu
  committed
  ae6ebf8
- Run unit tests in mapping, fem, and feec folders
  yguclu
  committed
  7dff021
- Run unit tests in api folder
  yguclu
  committed
  fdd357a
- Revert "Do not create __psydac__ directory in parallel"
  yguclu
  committed
  001e592
Commits on Jan 28, 2026
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  fae70d3
- Update `CHANGELOG.md` with new and previous changes
  yguclu
  authored
  b807f32
Commits on Feb 10, 2026
- Use SymPDE branch clean-multipatch-domain
  yguclu
  committed
  a06a7d3
- Provide interface orientation to Domain.join
  yguclu
  committed
  e968bc5
- Add interface orientation to multipatch geometry files
  yguclu
  committed
  a31e07a
Commits on Feb 11, 2026
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  29e82cf
Commits on Feb 12, 2026
- Use `ubuntu_install` action in `documentation` workflow
  yguclu
  authored
  326952b
- Clone the latest release of PETSc (see PR #539)
  yguclu
  authored
  800e506
- Install mpi4py >= 4.0.0 in `parallel_h5py` action
  yguclu
  authored
  9f092d3
Commits on Apr 21, 2026
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  committed
  e41f301
- Add missing orientation (-1 or +1) to connectivity in test_plot_field
  yguclu
  committed
  3702e70
- Minor cleanup
  yguclu
  committed
  d91b2ba
- Avoid deprecation warning about scipy.odr
  yguclu
  committed
  0b426e2
- Check input domain type in Geometry.from_topological_domain
  yguclu
  committed
  349eee8
Commits on Apr 22, 2026
- Add docstring to translate() in psydac.cad.cad
  yguclu
  committed
  a84e24d
Commits on Sep 4, 2026
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  e291f2a
Commits on Sep 9, 2026
- Test SymPDE version 0.20.0 (from GitHub)
  yguclu
  authored
  b403819
Commits on Sep 11, 2026
- Fix wrong action filename in docs workflow
  yguclu
  authored
  ca148d0
- Give name to checkout step in testing workflow
  yguclu
  authored
  43082ab
- Fix module name in documentation: cmd.mesh >> cmd.psydac_mesh
  yguclu
  authored
  2cb2971
Commits on Oct 3, 2026
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  bd4c072
- Use SymPDE 0.20.0 from PyPI
  yguclu
  authored
  0d5d648
- Reactivate all Python versions in testing workflow
  yguclu
  authored
  42f2b57
Commits on Oct 4, 2026
- Fix bad merge (wrong Python versions) in testing.yml
  yguclu
  authored
  75eebd5
- Mention SymPDE 0.20.0 in CHANGELOG.md
  yguclu
  authored
  6bb18ec
Commits on Oct 5, 2026
- First draft of CLAUDE.md configuration file
  yguclu
  committed
  ec4dc64
- Improve CLAUDE.md
  yguclu
  committed
  c27f72e
- Expand 'Code standards' section of CLAUDE.md
  yguclu
  committed
  d9af9ad
- Further improve CLAUDE.md
  yguclu
  committed
  9adfa83
- Remove blank imports from psydac/cad/__init__.py
  yguclu
  committed
  10a5088
- Remove obsolete test_geometry_1() from psydac.cad.tests.test_geometry
  yguclu
  committed
  bc216cd
- Add Pylint configuration to pyproject.toml
  yguclu
  committed
  89e0b6b
- Update CHANGELOG.md
  yguclu
  committed
  bc6e145
Commits on Oct 6, 2026
- Use Geometry.from_file in polar poisson_2d example
  yguclu
  committed
  a6e0484
- Move imports into functions in polar poisson_2d example
  yguclu
  committed
  66c4041
- Allow Geometry.__init__ without mappings
  yguclu
  committed
  3b324b3
- Remove obsolete __main__ demo from psydac.cad.cad
  yguclu
  committed
  194e865
- Check user-given domain in Geometry.from_file
  yguclu
  committed
  2db333c
- Write plot of multipatch Poisson test to temporary directory
  yguclu
  committed
  d3a2973
Commits on Oct 8, 2026
- Return Cartesian control points from psydac.cad.gallery
  yguclu
  committed
  6a957db
- Use Cartesian control points in psydac.cad.elevate and refine
  yguclu
  committed
  8ba3869
- Fix misleading comment in NurbsMapping.from_control_points_weights
  yguclu
  committed
  ce0f528
- Add asserts to test_geometry_2d_1 and test_geometry_2d_2
  yguclu
  committed
  bc0afb2
- Test elevate and refine on all NURBS mappings of the CAD gallery
  yguclu
  committed
  a6c0ef4
- Remove test_geometry_2d_3 and test_geometry_2d_4
  yguclu
  committed
  295fe30
Commits on Oct 9, 2026
- Keep the weights of NURBS mappings in psydac.cad.translate
  yguclu
  committed
  123ff81
- Accept spline mappings in psydac.cad.elevate and refine
  yguclu
  committed
  c460ed6
- Avoid setting the shape of arrays in KroneckerLinearSolver
  yguclu
  committed
  d968c3f
- Fix psydac.cad.elevate and refine for distributed mappings
  yguclu
  committed
  739a5a4
- Fix error message in get_max_degree_of_one_space
  yguclu
  committed
  d9fc803
- Check the weights field in NurbsMapping.__init__
  yguclu
  committed
  d330670
- Require a domain decomposition in Geometry.__init__
  yguclu
  committed
  6441cde
- Create Geometry.from_file through __init__ and remove read()
  yguclu
  committed
  f7d82d9
- Detail the changes to Geometry in CHANGELOG.md
  yguclu
  committed
  9875e54
Commits on Oct 10, 2026
- Fix psydac.cad.elevate and refine for mappings with pdim=1, see #618
  yguclu
  committed
  d2c34bc
- Fix reading multipatch geometries with pdim=1, see #617
  yguclu
  committed
  9b567ce
- Add 1D unit tests for Geometry and rename the 2D ones
  yguclu
  committed
  3797cea
- Mention fixes of #617 and #618 in CHANGELOG.md
  yguclu
  committed
  9c29988
- Test mappings of curves in 2D/3D and surfaces in 3D
  yguclu
  committed
  899e223
- Add missing #527 entries to CHANGELOG.md
  yguclu
  committed
  361d723
- Use temporary directories instead of xdist groups in test_geometry.py
  yguclu
  committed
  23b1f47
- Reduce code duplication between psydac.cad.elevate and refine
  yguclu
  committed
  8525407
- Fix psydac.cad.refine when inserting existing knots, see #619
  yguclu
  committed
  4d1d23f
- Mention fix of #619 in CHANGELOG.md
  yguclu
  committed
  bfa7906
- Use mpi_tmp_path fixture in test_geometry_with_mpi_dims_mask
  yguclu
  committed
  c0fc0f5
- Restore MPI tests, PETSc tests and coverage report in testing workflow
  yguclu
  committed
  ff4b7c2
- Add interface orientation to plate_with_hole multipatch geometry files
  yguclu
  committed
  dae164f
- Store mpi_dims_mask in DomainDecomposition and use it in refine, see #622
  yguclu
  committed
  0ec6c9f
- Mention fix of #622 in CHANGELOG.md
  yguclu
  committed
  dc6c4fc
- Fix local_ncells in DomainDecomposition.refine, see #623
  yguclu
  committed
  0d43b14
- Mention fix of #623 in CHANGELOG.md
  yguclu
  committed
  0a3752d
Commits on Oct 14, 2026
- Update Igakit to dalcinl/igakit@2a0c9ee, which supports NumPy 2.5
  yguclu
  committed
  a811068
- Merge branch 'devel' into yguclu-improve-Geometry
  yguclu
  authored
  54ef6d9
Commits on Oct 15, 2026
Commits on Oct 16, 2026
Commits on Oct 17, 2026
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