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phyletica

Phyletica Lab: Exploring biodiversification

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  1. ecoevolity ecoevolity Public

    Estimating evolutionary coevality

    C++ 8 3

  2. lab-protocols lab-protocols Public

    Laboratory protocols used in the Phyletica Lab at Auburn University

    6 2

  3. SumTimes SumTimes Public

    Tool for estimating the probability of divergence-time scenarios from posterior samples of trees.

    Python 1 1

  4. pycoevolity pycoevolity Public

    A python package for summarizing the output of Ecoevolity

    Python 1

  5. gekgo gekgo Public

    Comparative phylogenetics of Philippine gekkonids

    HTML 1

  6. abc-glm-marginal-test abc-glm-marginal-test Public

    Simulation-based test of general linear model marginal likelihood method

    Shell 1

Repositories

Showing 10 of 31 repositories
  • phyletica.github.io Public

    phyletica.github.io

    phyletica/phyletica.github.io’s past year of commit activity
    HTML 0 2 0 0 Updated Feb 25, 2026
  • ecoevolity Public

    Estimating evolutionary coevality

    phyletica/ecoevolity’s past year of commit activity
    C++ 8 GPL-3.0 3 0 0 Updated Feb 22, 2026
  • ecoevolity-docker Public

    A repo for building a Docker image running ecoevolity

    phyletica/ecoevolity-docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jan 4, 2026
  • ecoevolity-gh-actions-testing Public Forked from phyletica/ecoevolity

    Repo for testing github actions.

    phyletica/ecoevolity-gh-actions-testing’s past year of commit activity
    C++ 0 GPL-3.0 3 0 0 Updated Jan 2, 2026
  • pycoevolity Public

    A python package for summarizing the output of Ecoevolity

    phyletica/pycoevolity’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jan 2, 2026
  • codiv-sanger-bake-off-tex Public

    TeX files for the Phyletica Lab project at http://phyletica.org/codiv-sanger-bake-off

    phyletica/codiv-sanger-bake-off-tex’s past year of commit activity
    TeX 0 0 0 0 Updated Nov 26, 2025
  • codiv-sanger-bake-off Public

    Comparing approximate and full-likelihood approaches to estimating temporal clustering of divergence times among taxa.

    phyletica/codiv-sanger-bake-off’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 19, 2025
  • SDSDsim-phyddle-experiments Public

    Machine learning experiments with state-dependent birth-death models with shared and multifurcating divergences

    phyletica/SDSDsim-phyddle-experiments’s past year of commit activity
    Python 0 0 0 0 Updated Jun 22, 2025
  • namu Public

    Phylo experiment

    phyletica/namu’s past year of commit activity
    C++ 0 0 0 0 Updated Jun 11, 2025
  • SDSDsim Public

    Simulating trees under a state-dependent birth-death process with shared and divergences

    phyletica/SDSDsim’s past year of commit activity
    Python 0 0 0 0 Updated Mar 5, 2025
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