Predictive models for flares in inflammatory bowel disease

Genentech Project Data Scientists: Ryan Gan and Diana Sun

Email about repository: ganr1@gene.com

Public repository of the predictive models for the manuscript:

Title: Replicating prediction algorithms for hospitalization and corticosteroid use in patients with inflammatory bowel disease.

Authors: Ryan Gan, Diana Sun, Amanda Tatro, Shirley Cohen-Mekelburg, Wyndy L. Wiitala, Ji Zhu, Akbar K. Waljee.

Repository Overview

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In the public repository, there are two main folders scripts and results. In the program scrips, there is a data directory that is hidden and not included as we no longer have access to data due to data use agreements with Optum.

• scripts: Two sub folders in this folder.

  • analysis: Contains the scripts to fit and test predictive models
  • sql_query: Contains SQL queries and scripts to build the analysis dataframe to use in analyses. Requires Optum license and data cut of IBD patients.

• results: Folder that contains results. See overview in analysis folder for where specific model results are saved.