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fixes for ROCKETSHIP 2.0
- #9
#9
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lsaca05
merged 29 commits into
dev
petmri/DCEPrep:dev
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optimize
petmri/DCEPrep:optimize
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Sep 1, 2026
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fixes for ROCKETSHIP 2.0
#9
lsaca05
merged 29 commits into
dev
petmri/DCEPrep:dev
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optimize
petmri/DCEPrep:optimize
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Commits on Jul 1, 2026
remove APOE ref in spreadsheet unless it exists
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update refs to rawdata to fit new BIDS standard (v1.11.1)
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do not double gaussian normalize a slice if there are too few WM voxels on that slice
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update skip logic to look for gzipped T1map
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Commits on Aug 22, 2026
Refactor DCE and VFA processing scripts to use updated mask naming conventions
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Add support for Python execution in T1 mapping process
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Add Python job to actions
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add p to getopts list
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Commits on Aug 24, 2026
genericizing a couple calls for env var compat, add ability to limit parallel jobs, new path search method, log autoAIF
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idk how autoAIF wasn't enabled in runner
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update checkout actions
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Commits on Aug 25, 2026
stupid runner not updating repo
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surely this is the last line i need
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forgot it for python run LUL
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Fix PR checkout ref handling
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Run workflow on all branches
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another attempt at getting PRs to pull the right thing
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turns out me just dumb
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revert checkout specifying, only do docker on the core branches
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fail actions if any result files are missing
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use new env for to specify workspace ROCKETSHIP
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Refactor DCEPrep integration scripts to use environment variables for ROCKETSHIP and GPUFIT paths, streamline preprocessing, and update documentation for clarity.
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Commits on Aug 26, 2026
correct path search strings
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Commits on Aug 27, 2026
fix actions path to autoAIF weights
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hopeful autoAIF weight path fix for runner
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remove PDF gen/upload from actions
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missed a spot
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Commits on Aug 29, 2026
Refactor path resolution for ROCKETSHIP and GPUFIT, enhance error handling, and update output file naming conventions to include gzip compression.
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Commits on Sep 1, 2026
gzip all DCE nii outputs, fix log output w/ w/o -p, fix plot_anat coord cuts, fix caserep aif NaNs, fix rawdata->sourcedata/raw refs, fix a couple other naming changes, fix exclude sheet key diffs
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