Skip to content
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
67 changes: 47 additions & 20 deletions test/resources/biosynth1_network.gpml
Original file line number Diff line number Diff line change
Expand Up @@ -2,107 +2,134 @@
<ns0:Graphics BoardWidth="1144" BoardHeight="1247"/>
<ns0:DataNode TextLabel="Phytostero" GraphId="t0" Type="Metabolite">
<ns0:Graphics CenterX="195" CenterY="357" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Triterpeno" GraphId="t1" Type="Metabolite">
<ns0:Graphics CenterX="197" CenterY="529" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Monoterpen" GraphId="t8" Type="Metabolite">
<ns0:Graphics CenterX="813" CenterY="423" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Geranyl di" GraphId="t7" Type="Metabolite">
<ns0:Graphics CenterX="450" CenterY="424" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Farnasyl d" GraphId="t3" Type="Metabolite">
<ns0:Graphics CenterX="455" CenterY="631" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="FPP syntha" GraphId="t9" Type="Metabolite">
<ns0:Graphics CenterX="571" CenterY="528" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Squalene" GraphId="t2" Type="Metabolite">
<ns0:Graphics CenterX="198" CenterY="633" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Sesquiterp" GraphId="t4" Type="Metabolite">
<ns0:Graphics CenterX="810" CenterY="629" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="2X" GraphId="t6" Type="Metabolite">
<ns0:Graphics CenterX="379" CenterY="598" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Saponins" GraphId="t5" Type="Metabolite">
<ns0:Graphics CenterX="201" CenterY="806" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Geranylger" GraphId="t11" Type="Metabolite">
<ns0:Graphics CenterX="422" CenterY="909" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="GGPP synth" GraphId="t10" Type="Metabolite">
<ns0:Graphics CenterX="577" CenterY="736" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Diterpenes" GraphId="t12" Type="Metabolite">
<ns0:Graphics CenterX="887" CenterY="907" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="Polyterpen" GraphId="t14" Type="Metabolite">
<ns0:Graphics CenterX="508" CenterY="1116" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:DataNode TextLabel="(+PP)" GraphId="t13" Type="Metabolite">
<ns0:Graphics CenterX="582" CenterY="1012" Width="80" Height="30" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff"/>
<ns0:Xref Database="" ID=""/>
</ns0:DataNode>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="220" Y="260" GraphRef="t0" RelX="1.0" RelY="0.0"/>
<ns0:Point X="500" Y="540" GraphRef="t1" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="642" Y="682" GraphRef="t8" RelX="1.0" RelY="0.0"/>
<ns0:Point X="417" Y="457" GraphRef="t7" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="577" Y="617" GraphRef="t3" RelX="1.0" RelY="0.0"/>
<ns0:Point X="503" Y="617" GraphRef="t7" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="220" Y="260" GraphRef="t1" RelX="1.0" RelY="0.0"/>
<ns0:Point X="634" Y="674" GraphRef="t2" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="676" Y="716" GraphRef="t4" RelX="1.0" RelY="0.0"/>
<ns0:Point X="621" Y="661" GraphRef="t3" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="346" Y="416" GraphRef="t2" RelX="1.0" RelY="0.0"/>
<ns0:Point X="587" Y="627" GraphRef="t3" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="220" Y="260" GraphRef="t5" RelX="1.0" RelY="0.0"/>
<ns0:Point X="629" Y="669" GraphRef="t2" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="580" Y="620" GraphRef="t11" RelX="1.0" RelY="0.0"/>
<ns0:Point X="711" Y="850" GraphRef="t3" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="725" Y="765" GraphRef="t12" RelX="1.0" RelY="0.0"/>
<ns0:Point X="895" Y="935" GraphRef="t11" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:Interaction ZOrder="32768" LineThickness="1.0">
<ns0:Graphics>
<ns0:Interaction>
<ns0:Graphics ZOrder="32768" LineThickness="1.0">
<ns0:Point X="585" Y="625" GraphRef="t14" RelX="1.0" RelY="0.0"/>
<ns0:Point X="983" Y="1098" GraphRef="t11" RelX="1.0" RelY="0.0" ArrowHead="mim-conversion"/>
</ns0:Graphics>
<ns0:Xref Database="" ID=""/>
</ns0:Interaction>
<ns0:InfoBox CenterX="0.0" CenterY="0.0" />
<ns0:Biopax />
</ns0:Pathway>