Add InstanSeg nucleus segmentation for H&E whole-slide images - #9
Merged
Codecov / codecov/project
succeeded
Aug 31, 2026 in 0s
65.62% (target 1.00%)
View this Pull Request on Codecov
65.62% (target 1.00%)
Details
Codecov Report
❌ Patch coverage is 71.94570% with 62 lines in your changes missing coverage. Please review.
✅ Project coverage is 65.62%. Comparing base (fa9ad74) to head (ffea1f3).
Additional details and impacted files
@@ Coverage Diff @@
## main #9 +/- ##
==========================================
+ Coverage 64.43% 65.62% +1.18%
==========================================
Files 9 13 +4
Lines 1119 1338 +219
==========================================
+ Hits 721 878 +157
- Misses 398 460 +62 | Files with missing lines | Coverage Δ | |
|---|---|---|
| src/spatialrefinery/__init__.py | 80.00% <100.00%> (ø) |
|
| src/spatialrefinery/segmentation/__init__.py | 33.33% <33.33%> (ø) |
|
| src/spatialrefinery/segmentation/_compat.py | 76.92% <76.92%> (ø) |
|
| src/spatialrefinery/segmentation/to_spatialdata.py | 85.29% <85.29%> (ø) |
|
| src/spatialrefinery/segmentation/instanseg.py | 53.62% <53.62%> (ø) |
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