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@lcbb Bathe BioNanoLab

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    19 repositories

    • pyDAEDALUS

      Public
      This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami
      Python
      •
      Other
      •10•19•1•0•Updated May 11, 2026May 11, 2026

    • BiosampleSQL

      Public
      Scripts used for sequencing analysis of "Enabling global-scale nucleic acid repositories through versatile, scalable biochemical selection from room-temperature…
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • PRISM-CellProfiler-Analysis-Pipelines

      Public
      PRISM CellProfiler Analysis Pipelines
      0•0•0•0•Updated Mar 20, 2023Mar 20, 2023

    • rouls

      Public
      Rouskin Lab Tools for analyzing DMS-MaPseq data
      HTML
      •2•0•0•0•Updated Apr 12, 2022Apr 12, 2022

    • ariadne

      Public
      Analyze outputs from pyDAEDALUS.
      Python
      •1•0•0•0•Updated Mar 13, 2022Mar 13, 2022

    • 3dRnaScaffoldedWireframeOrigami

      Public
      Jupyter notebook for analyzing DMS-MaPseq data from DREEM, applied to 3D RNA-scaffolded wireframe origami.
      PostScript
      •1•0•0•0•Updated Feb 3, 2022Feb 3, 2022

    • athena

      Public
      A GUI for automated sequence design of wireframe scaffolded DNA origami
      Python
      •
      Other
      •11•14•9•0•Updated Nov 3, 2021Nov 3, 2021

    • DNA-Memory-Blocks

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Mar 5, 2021Mar 5, 2021

    • HMM-Bayes

      Public
      MATLAB
      •0•7•1•0•Updated Feb 4, 2021Feb 4, 2021

    • MSD-Bayes

      Public
      MATLAB
      •0•2•0•0•Updated Feb 4, 2021Feb 4, 2021

    • METIS

      Public
      Mechanically Enhanced and Three-layered orIgami Structure
      Fortran
      •
      GNU General Public License v3.0
      •3•3•0•0•Updated Sep 28, 2019Sep 28, 2019

    • ssDNA-memory

      Public
      Single-stranded, kilobase DNA memory encoding scheme for archival in phage
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 17, 2019Mar 17, 2019

    • Off-Lattice-CanDo

      Public
      Off-lattice finite element solver for DNA nanostructures.
      MATLAB
      •
      Other
      •3•7•0•0•Updated Jan 28, 2019Jan 28, 2019

    • TALOS

      Public
      Designer scaffolded DNA 6HB-based wireframe nanoparticles
      Fortran
      •
      GNU General Public License v3.0
      •4•6•0•0•Updated Jul 28, 2018Jul 28, 2018

    • PERDIX

      Public
      Designer scaffolded DNA DX-based wireframe lattices
      Fortran
      •
      GNU General Public License v3.0
      •6•14•0•0•Updated Jul 28, 2018Jul 28, 2018

    • aPrime

      Public
      Primer selection for asymmetric PCR
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Apr 10, 2018Apr 10, 2018

    • FCS-Bayes

      Public
      Bayesian classifier to classify molecular motions in fluorescence microscopy videos http://fcs-bayes.org
      MATLAB
      •
      Other
      •0•1•0•0•Updated Nov 20, 2017Nov 20, 2017

    • SAPHIRE

      Public
      MATLAB tool for image processing, analysis, and time-series modeling of cellular phenotype dynamics from live-cell imaging data.
      MATLAB
      •
      Other
      •0•3•0•0•Updated Aug 10, 2017Aug 10, 2017

    • PRISM_analysis

      Public
      MATLAB
      •
      Other
      •0•0•0•0•Updated May 11, 2017May 11, 2017
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