Repositories list

• plantcv-geospatial

  Public
  Geospatial add-on package to PlantCV

  Python

  •

  Mozilla Public License 2.0

  •1•4•5•8•Updated Mar 6, 2026Mar 6, 2026

• plantcv

  Public
  Plant phenotyping with image analysis

  sciencebioinformaticsimage-analysis+ 2

  sciencebioinformaticsimage-analysisplant-phenotypingplantcv

  Python

  •

  Mozilla Public License 2.0

  •279•768•87•21•Updated Mar 6, 2026Mar 6, 2026

• panvaR

  Public
  A flexible tool for fine-mapping GWAS results

  gwasrrstats+ 2

  gwasrrstatsr-packagefine-mapping

  R

  •

  GNU General Public License v3.0

  •0•0•16•0•Updated Mar 6, 2026Mar 6, 2026

• plantcv-annotate

  Public
  add-on package for PlantCV annotation tools

  Python

  •

  Mozilla Public License 2.0

  •0•2•8•5•Updated Mar 5, 2026Mar 5, 2026

• plantcv-geospatial-tutorial-plant-height

  Public
  Jupyter Notebook

  •

  GNU General Public License v2.0

  •0•0•0•1•Updated Mar 4, 2026Mar 4, 2026

• pcvr

  Public
  R functions for use with plantCV output

  R

  •0•5•0•0•Updated Mar 2, 2026Mar 2, 2026

• plantcv-tutorial-watershed

  Public
  watershed tutorial

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•2•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-vis-nir

  Public
  plantcv-tutorial-vis-nir

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-v4-VIS-single-plant

  Public
  PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•5•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-v4-multiobject

  Public
  Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-unsupervised-ml

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-tripsacum-seedhead

  Public
  A tutorial for open source image analysis for phenotyping seedheads of tripsacum dactyloides

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-threshold

  Public
  Tutorial for understanding Thresholding using PlantCV.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•1•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-thermal

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-supervised-ml

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-simple-rgb-workflow

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •2•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-setaria-panicle

  Public
  Tutorial for using PlantCV for analysis of setaria panicle images for bristle count, panicle color and size.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-segment-image-series

  Public
  Tutorial for using PlantCV segment image series

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-seeds

  Public
  seed workflow tutorial

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•4•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-roi

  Public
  Tutorial for understanding Regions of Interest using PlantCV.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-rice-chalkiness

  Public
  Tutorial for analyzing chalkiness in rice grains.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-photosynthesis-multi

  Public
  Tutorial for using PlantCV for analysis of photosynthesis images that contain multiple objects (such as multiple plants or leaves).

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-photosynthesis

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-machine-learning

  Public
  Tutorial for analyzing image data using machine learning tools from PlantCV.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-kmeans-clustering

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•1•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-interactive-pollent-count

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-input-output

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •1•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-hyperspectral-smf-detection

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-hyperspectral

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026

• plantcv-tutorial-grayscale

  Public
  Tutorial for analyzing grayscale image data using PlantCV.

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Mar 1, 2026Mar 1, 2026