Repositories list

• px-submission-tool

  Public
  ProteomeXchange data submission tool

  Java

  •66 forks•44 stars•88 issues•55 pull requests•Updated Jun 2, 2026Jun 2, 2026

• pride-ontology

  Public
  The PRIDE ontology

  Creative Commons Attribution 4.0 International

  •1515 forks•33 stars•00 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• mzidentml-reader

  Public
  Python

  •

  Apache License 2.0

  •88 forks•00 stars•66 issues•44 pull requests•Updated Jun 1, 2026Jun 1, 2026

• crosslinking-api

  Public
  xiview-api provides REST endpoints to access crosslinking resources in PRIDE

  Python

  •

  Apache License 2.0

  •44 forks•22 stars•55 issues•00 pull requests•Updated Jun 1, 2026Jun 1, 2026

• pridepy

  Public
  Python client for PRIDE Archive Rest API.

  pythonpython-clientproteomics+ 3

  pythonpython-clientproteomicsmass-spectrometrypridepride-database

  Python

  •

  Apache License 2.0

  •99 forks•4040 stars•00 issues•00 pull requests•Updated May 30, 2026May 30, 2026

• pride-resources

  Public
  PRIDE Resources Forum (https://github.com/PRIDE-Archive/pride-resources/discussions)

  discussiondocumentationpride

  discussiondocumentationpride

  Apache License 2.0

  •66 forks•22 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• revised-archive-integration

  Public
  Redis implementation to communicate among micro services

  Java

  •00 forks•00 stars•44 issues•11 pull request•Updated May 21, 2026May 21, 2026

• opentargets

  Public
  Repository of opentargets scripts to move data from PRIDE expression to OpenTargets.

  Python

  •

  Apache License 2.0

  •22 forks•00 stars•11 issue•22 pull requests•Updated May 6, 2026May 6, 2026

• sdrf-validator-api

  Public
  validate SDRF throught api

  HTML

  •

  Apache License 2.0

  •00 forks•00 stars•22 issues•11 pull request•Updated Apr 30, 2026Apr 30, 2026

• test-artifact-project

  Public
  Test public package access

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• nf-downloadstats

  Public
  A pipeline to calculate number of file downloads

  Python

  •

  Apache License 2.0

  •22 forks•11 star•00 issues•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• jsdrf

  Public
  java library to validate SDRF file formats

  Java

  •

  Apache License 2.0

  •33 forks•00 stars•11 issue•00 pull requests•Updated Apr 9, 2026Apr 9, 2026

• ols-client

  Public
  Java ols client designed for OLS-Dialog tool

  Java

  •77 forks•33 stars•00 issues•11 pull request•Updated Apr 9, 2026Apr 9, 2026

• px-web-app

  Public
  CSS

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• pubmed-id-fetcher

  Public
  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•22 pull requests•Updated Apr 7, 2026Apr 7, 2026

• pyprideap

  Public
  pyprideap is a library to handle affinity proteomics files from PRIDE database; including reading; parsing validating and other algorithms

  Python

  •

  Apache License 2.0

  •22 forks•22 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• deeplogbot

  Public
  deeplogbot: A hybrid Isolation Forest, and Transformer-based system for detecting bot behavior in log data.

  Python

  •

  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 21, 2026Mar 21, 2026

• exclusions

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• xiview-server

  Public
  HTML

  •33 forks•00 stars•11 issue•11 pull request•Updated Jan 23, 2026Jan 23, 2026

• pride-checksum

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 11, 2025Dec 11, 2025

• quetzal-annotator

  Public
  Main Quetzal annotator code

  Python

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jul 23, 2025Jul 23, 2025

• protein-details-fetcher

  Public
  Protein details fetcher from Repositories UNIPROT, ENSEMBL

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Jul 12, 2025Jul 12, 2025

• pride-mod

  Public
  PRIDE-Mod is a Java API to handle different modifications such as UNIMOD or PSI-MOD.

  Java

  •22 forks•44 stars•22 issues•22 pull requests•Updated Jul 12, 2025Jul 12, 2025

• .github

  Public
  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 1, 2025Feb 1, 2025

• xxindex

  Public
  A library to index XML files for random access.

  Java

  •55 forks•22 stars•11 issue•00 pull requests•Updated Oct 7, 2024Oct 7, 2024

• DataHarmonizer

  Public
  A standardized browser-based spreadsheet editor and validator that can be run offline and locally.

  JavaScript

  •

  MIT License

  •3838 forks•00 stars•00 issues•00 pull requests•Updated Aug 22, 2024Aug 22, 2024

• pride-lorikeet

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 20, 2024May 20, 2024

• xiview-monit

  Public
  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 18, 2024Apr 18, 2024

• epma

  Public
  European Proteome-Metabolome Archive

  Apache License 2.0

  •00 forks•00 stars•1111 issues•00 pull requests•Updated Jan 6, 2024Jan 6, 2024

• affinity-proteomics

  Public
  Affinity Proteomics include the documentation, examples and issue for the Project.

  Apache License 2.0

  •00 forks•00 stars•88 issues•00 pull requests•Updated Jan 5, 2024Jan 5, 2024