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    40 repositories

    • Gout_GWAS_Code

      Public
      Repository for all the codes written for gout GWAS meta-analysis and all other analyses that used the meta-analysis results
      R
      •
      GNU General Public License v3.0
      •0•7•0•0•Updated Aug 20, 2024Aug 20, 2024

    • GenomicPred

      Public
      Shell
      •1•0•0•1•Updated Jul 31, 2023Jul 31, 2023

    • PRS-Project

      Public
      Repository for all code related to my polygenic risk score project
      HTML
      •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • selectionTools

      Public archive
      Pipeline to take VCF through to Selection Analysis.
      Python
      •
      MIT License
      •24•58•15•1•Updated Dec 11, 2022Dec 11, 2022

    • merrimanlab.github.io

      Public
      HTML
      •
      MIT License
      •2•1•0•0•Updated May 18, 2022May 18, 2022

    • human_genomics_pipeline

      Public
      A simple Snakemake workflow to process paired-end sequencing data (WGS) using bwa/GATK4.
      Python
      •22•2•0•1•Updated Apr 19, 2022Apr 19, 2022

    • NeSI_GATK

      Public
      workflow for GATK on NeSI
      Shell
      •
      MIT License
      •0•3•4•0•Updated Dec 13, 2021Dec 13, 2021

    • CETP-Project

      Public
      1•0•0•0•Updated Sep 8, 2021Sep 8, 2021

    • variant_calling_pipeline

      Public
      Python
      •0•2•0•0•Updated May 20, 2021May 20, 2021

    • gwasDB

      Public
      Database to store summary results from GWAS
      R
      •0•0•4•0•Updated Dec 9, 2020Dec 9, 2020

    • gsClustBrowse

      Public
      Shiny app for browsing the exported intensities from Genome Studio
      R
      •
      MIT License
      •2•0•2•0•Updated Jul 15, 2020Jul 15, 2020

    • old_website

      Public
      Lab website
      CSS
      •
      MIT License
      •5•8•0•0•Updated Oct 2, 2019Oct 2, 2019

    • merrimanR

      Public
      An R package containing useful functions
      R
      •
      MIT License
      •1•0•0•0•Updated Aug 5, 2019Aug 5, 2019

    • PCAplotting

      Public
      PCA plotting app
      R
      •3•1•0•0•Updated Feb 19, 2018Feb 19, 2018

    • Cadzow2017_Ukbiobank_Gout

      Public
      Code used in the analysis of https://arthritis-research.biomedcentral.com/articles/10.1186/s13075-017-1390-1
      R
      •1•1•0•0•Updated Aug 15, 2017Aug 15, 2017

    • GWASPipeline

      Public
      A basic GWAS analyses workflow. Worked examples provided in rendered markdown.
      HTML
      •4•6•0•0•Updated Nov 11, 2016Nov 11, 2016

    • ExporatoryGenomes

      Public
      Exploratory and visual analytical tools for plant genomes.
      1•2•0•0•Updated Nov 3, 2016Nov 3, 2016

    • GenomeDB

      Public
      GenomeDB is a generic database schema for genome-wide summary datasets. The goal is to be able to provide a general abstraction suited to any form of genome ana…
      HTML
      •0•1•1•0•Updated Oct 26, 2016Oct 26, 2016

    • GWrangle

      Public
      Helpful code, scripts and functions fro wrangling genomic datasets
      R
      •0•0•0•0•Updated Oct 3, 2016Oct 3, 2016

    • CommonWorkflows

      Public
      A repository to document common workflows or computational protocols (for example merging and subsetting VCF files).
      0•0•0•0•Updated Oct 3, 2016Oct 3, 2016

    • GeneExpressionAnalysis

      Public
      Shiny app for basic exploration of gene expression datasets
      HTML
      •0•0•0•0•Updated Sep 20, 2016Sep 20, 2016

    • glida

      Public
      GLIDA is a tool to help analyse patterns of LD. Primarily visual and exploratory-based, with the ability to add gene annotations.
      HTML
      •0•0•0•0•Updated Jul 24, 2016Jul 24, 2016

    • eQTL_project

      Public
      Development of a central data warehouse for eQTL and gene expression data. Including a SHINY interface to perform lookups and basic exploration.
      R
      •0•2•0•0•Updated Jul 21, 2016Jul 21, 2016

    • snp_design

      Public
      Designs custom probes for SNPs with NO ID
      Python
      •3•3•0•0•Updated Jun 23, 2016Jun 23, 2016

    • merrimanDW

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 23, 2016Jun 23, 2016

    • GTExEDA

      Public
      Visualisation and exploration of gene expression data from GTEx, using R's data.table package.
      HTML
      •0•1•0•0•Updated Jun 15, 2016Jun 15, 2016

    • Impute

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 18, 2016May 18, 2016

    • Kottgen_ReseqAnalysis

      Public
      Various resequencing trials with the Kottgen data
      0•1•0•0•Updated Apr 19, 2016Apr 19, 2016

    • LDCalculator

      Public
      Shiny Interface for the calculation of Linkage Disequilibrium.
      R
      •2•8•0•0•Updated Apr 7, 2016Apr 7, 2016

    • PennCNV

      Public
      Copy number vaiation detection from SNP arrays
      C
      •
      Other
      •55•0•0•0•Updated Mar 28, 2016Mar 28, 2016
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