Repositories list

• AnyVLM

  Public
  Python

  •

  Apache License 2.0

  •00 forks•33 stars•55 issues•11 pull request•Updated Jun 26, 2026Jun 26, 2026

• variation-normalizer-manuscript

  Public
  Issue tracker for Variation Normalizer manuscript work

  Jupyter Notebook

  •

  MIT License

  •00 forks•22 stars•11 issue•11 pull request•Updated Jun 26, 2026Jun 26, 2026

• wags-llm

  Public
  Wagnerds toolkit for structured LLM workflows.

  Python

  •

  MIT License

  •00 forks•22 stars•66 issues•22 pull requests•Updated Jun 25, 2026Jun 25, 2026

• cool-seq-tool

  Public
  bioinformaticsgenomics

  bioinformaticsgenomics

  Python

  •

  MIT License

  •11 fork•44 stars•3737 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• mci-knowledge-pilot

  Public
  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated May 20, 2026May 20, 2026

• VarCat-Demo

  Public
  VarCat Demonstration Guide

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 15, 2026May 15, 2026

• wags-tails

  Public
  Data acquisition tools for Wagnerds

  bioinformaticsgenomics-data

  bioinformaticsgenomics-data

  Python

  •

  MIT License

  •00 forks•11 star•1616 issues•11 pull request•Updated Apr 24, 2026Apr 24, 2026

• fda_pediatric_oncology_drug_approvals

  Public
  Python

  •00 forks•00 stars•44 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• software-templates

  Public
  Cookiecutter templates for lab software projects

  Python

  •

  MIT License

  •00 forks•00 stars•1515 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• agct

  Public
  Another Genome Conversion Tool: Python frontend to Rust chainfile crate

  bioinformaticsgenomics

  bioinformaticsgenomics

  Python

  •

  MIT License

  •00 forks•33 stars•88 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• regbot

  Public
  Python

  •

  MIT License

  •00 forks•11 star•99 issues•11 pull request•Updated Jan 6, 2026Jan 6, 2026

• .github

  Public
  Organization-wide default community health files and configurations for GML repositories.

  MIT License

  •00 forks•00 stars•33 issues•00 pull requests•Updated Jan 2, 2026Jan 2, 2026

• dcd_mapping

  Public archive
  AVE DCD Mapping

  Jupyter Notebook

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Dec 22, 2025Dec 22, 2025

• gks-conversion-tool

  Public
  An experimental python package for converting between GKS models and other resources (currently working on HL7v2)

  Makefile

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 5, 2025Sep 5, 2025

• fda-nlp

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•77 issues•00 pull requests•Updated Jul 29, 2025Jul 29, 2025

• genomicmedlab.org

  Public archive
  Building a lab website

  HTML

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 23, 2024Dec 23, 2024

• CSHL-Variant-Representation-and-Annotation

  Public archive
  This repo contains exercises for the CSHL 2024 Seqtec course

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2024Dec 9, 2024

• bioinformatics-python

  Public archive
  This repo contains exercises for the CSHL 2024 Seqtec course

  Jupyter Notebook

  •

  MIT License

  •11 fork•11 star•11 issue•00 pull requests•Updated Nov 20, 2024Nov 20, 2024

• variant-interpretation

  Public archive
  This repo contains exercises for the CSHL 2024 Seqtec course

  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 20, 2024Nov 20, 2024

• seqrepo-rest-service

  Public
  OpenAPI-based REST interface to biological sequences and sequence metadata

  Python

  •

  Apache License 2.0

  •66 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2024Sep 25, 2024

• therapy_normalization_analysis

  Public archive
  Jupyter Notebook

  •00 forks•00 stars•33 issues•00 pull requests•Updated Jan 19, 2024Jan 19, 2024

• fantasy-football-rulebook

  Public
  Rulebook for the annual Griffith / Wagner Labs Fantasy Football League

  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•11 issue•00 pull requests•Updated Aug 21, 2023Aug 21, 2023

• w3id.org

  Public
  Website source code for w3id.org.

  HTML

  •1.8k1.8k forks•00 stars•00 issues•00 pull requests•Updated Apr 4, 2023Apr 4, 2023

• schema-automator

  Public archive
  Automated assistance for the schema development lifecycle

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2525 forks•00 stars•00 issues•00 pull requests•Updated Aug 23, 2022Aug 23, 2022

• wagner-lab-issues

  Public archive
  General issues and tasks for the Wagner Lab.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2022Jun 1, 2022

• curated-gene-lists

  Public archive
  HTML

  •

  MIT License

  •00 forks•00 stars•44 issues•00 pull requests•Updated Mar 12, 2022Mar 12, 2022

• tragedy

  Public archive
  Truly Resplendent Architecture for Genomic Evidence Discovery in YAML

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•44 issues•00 pull requests•Updated Feb 24, 2022Feb 24, 2022

• interop

  Public archive
  General discussion of topics related to interoperability

  HTML

  •44 forks•00 stars•00 issues•00 pull requests•Updated Dec 26, 2021Dec 26, 2021

• phenopacket-schema

  Public archive
  Repository for the GA4GH inlined phenopacket schema

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •3232 forks•00 stars•00 issues•00 pull requests•Updated May 7, 2021May 7, 2021

• protobuf_testing

  Public
  Testing Google Protocol Buffers for use with VRS

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2021Mar 18, 2021