Repositories list

• MESSI_manuscript

  Public
  Repo to store figures for submitting MESSI

  R

  •00 forks in CompBio-Lab/MESSI_manuscript•00 stars in CompBio-Lab/MESSI_manuscript•00 issues in CompBio-Lab/MESSI_manuscript•00 pull requests in CompBio-Lab/MESSI_manuscript•Updated Nov 4, 2026Nov 4, 2026

• simulation_multiomics_data

  Public
  R

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  Other

  •00 forks in CompBio-Lab/simulation_multiomics_data•00 stars in CompBio-Lab/simulation_multiomics_data•00 issues in CompBio-Lab/simulation_multiomics_data•00 pull requests in CompBio-Lab/simulation_multiomics_data•Updated Nov 4, 2026Nov 4, 2026

• MESSI-pipeline

  Public
  MESSI - Multimodal Experiments with SyStematic Interrogation in nextflow

  pythonshelldocker+ 7

  pythonshelldockermachine-learningrdeep-learningnextflowmultimodalnextflow-pipelineapptainer

  R

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  MIT License

  •00 forks in CompBio-Lab/MESSI-pipeline•44 stars in CompBio-Lab/MESSI-pipeline•2626 issues in CompBio-Lab/MESSI-pipeline•11 pull request in CompBio-Lab/MESSI-pipeline•Updated Nov 4, 2026Nov 4, 2026

• dysf_mirna

  Public
  R

  •00 forks in CompBio-Lab/dysf_mirna•00 stars in CompBio-Lab/dysf_mirna•00 issues in CompBio-Lab/dysf_mirna•00 pull requests in CompBio-Lab/dysf_mirna•Updated Sep 10, 2026Sep 10, 2026

• caretMultimodal

  Public
  Multimodal late fusion in R

  R

  •

  Other

  •00 forks in CompBio-Lab/caretMultimodal•11 star in CompBio-Lab/caretMultimodal•00 issues in CompBio-Lab/caretMultimodal•00 pull requests in CompBio-Lab/caretMultimodal•Updated Sep 10, 2026Sep 10, 2026

• BINN_experiments

  Public
  Training Lib for BINN

  HTML

  •00 forks in CompBio-Lab/BINN_experiments•00 stars in CompBio-Lab/BINN_experiments•55 issues in CompBio-Lab/BINN_experiments•00 pull requests in CompBio-Lab/BINN_experiments•Updated Aug 10, 2026Aug 10, 2026

• AbsoluteSmooth

  Public
  OmniPath network smoothing of absolute limma statistics for pathway perturbation analysis and external validation

  R

  •

  MIT License

  •00 forks in CompBio-Lab/AbsoluteSmooth•00 stars in CompBio-Lab/AbsoluteSmooth•00 issues in CompBio-Lab/AbsoluteSmooth•00 pull requests in CompBio-Lab/AbsoluteSmooth•Updated Jul 31, 2026Jul 31, 2026

• cytokineFindeR

  Public
  This is the R package developed for various regression methods for inferring cytokine activity using transcriptomic data and LRI databases

  R

  •

  GNU General Public License v3.0

  •00 forks in CompBio-Lab/cytokineFindeR•44 stars in CompBio-Lab/cytokineFindeR•22 issues in CompBio-Lab/cytokineFindeR•00 pull requests in CompBio-Lab/cytokineFindeR•Updated Jun 8, 2026Jun 8, 2026

• smbpls_2026

  Public
  Sparse Multi-Block Partial Least Squares Algorithm

  Jupyter Notebook

  •

  MIT License

  •00 forks in CompBio-Lab/smbpls_2026•00 stars in CompBio-Lab/smbpls_2026•00 issues in CompBio-Lab/smbpls_2026•00 pull requests in CompBio-Lab/smbpls_2026•Updated May 28, 2026May 28, 2026

• asthma_LAR-mRNA_biomarkers

  Public
  HTML

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  MIT License

  •00 forks in CompBio-Lab/asthma_LAR-mRNA_biomarkers•00 stars in CompBio-Lab/asthma_LAR-mRNA_biomarkers•00 issues in CompBio-Lab/asthma_LAR-mRNA_biomarkers•00 pull requests in CompBio-Lab/asthma_LAR-mRNA_biomarkers•Updated Apr 4, 2026Apr 4, 2026

• VisiumVisualizations

  Public
  R

  •00 forks in CompBio-Lab/VisiumVisualizations•11 star in CompBio-Lab/VisiumVisualizations•22 issues in CompBio-Lab/VisiumVisualizations•00 pull requests in CompBio-Lab/VisiumVisualizations•Updated Mar 11, 2026Mar 11, 2026

• scd_multimodal_litreview

  Public
  HTML

  •00 forks in CompBio-Lab/scd_multimodal_litreview•00 stars in CompBio-Lab/scd_multimodal_litreview•00 issues in CompBio-Lab/scd_multimodal_litreview•00 pull requests in CompBio-Lab/scd_multimodal_litreview•Updated Feb 7, 2026Feb 7, 2026

• omicsBioAnalytics

  Public
  R

  •00 forks in CompBio-Lab/omicsBioAnalytics•00 stars in CompBio-Lab/omicsBioAnalytics•00 issues in CompBio-Lab/omicsBioAnalytics•11 pull request in CompBio-Lab/omicsBioAnalytics•Updated Dec 2, 2025Dec 2, 2025

• cytokinefinder_analysis

  Public
  This is a repository intended to show all of the analyses done for the cytokineFindeR manuscript

  R

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  MIT License

  •00 forks in CompBio-Lab/cytokinefinder_analysis•11 star in CompBio-Lab/cytokinefinder_analysis•00 issues in CompBio-Lab/cytokinefinder_analysis•00 pull requests in CompBio-Lab/cytokinefinder_analysis•Updated Sep 30, 2025Sep 30, 2025

• omics-bioanalytics-alexa-skill

  Public
  Companion Alexa Skill for the Omics BioAnalytics R Shiny web app

  JavaScript

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  Other

  •00 forks in CompBio-Lab/omics-bioanalytics-alexa-skill•00 stars in CompBio-Lab/omics-bioanalytics-alexa-skill•00 issues in CompBio-Lab/omics-bioanalytics-alexa-skill•00 pull requests in CompBio-Lab/omics-bioanalytics-alexa-skill•Updated Aug 1, 2025Aug 1, 2025

• bcg_skinblood_crosstalk

  Public
  Jupyter Notebook

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  MIT License

  •00 forks in CompBio-Lab/bcg_skinblood_crosstalk•00 stars in CompBio-Lab/bcg_skinblood_crosstalk•00 issues in CompBio-Lab/bcg_skinblood_crosstalk•00 pull requests in CompBio-Lab/bcg_skinblood_crosstalk•Updated Jun 30, 2025Jun 30, 2025

• bulk_rnaseq_tutorial

  Public
  Shell

  •00 forks in CompBio-Lab/bulk_rnaseq_tutorial•00 stars in CompBio-Lab/bulk_rnaseq_tutorial•00 issues in CompBio-Lab/bulk_rnaseq_tutorial•00 pull requests in CompBio-Lab/bulk_rnaseq_tutorial•Updated Jan 25, 2025Jan 25, 2025

• bruno

  Public
  Python

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  MIT License

  •11 fork in CompBio-Lab/bruno•00 stars in CompBio-Lab/bruno•00 issues in CompBio-Lab/bruno•00 pull requests in CompBio-Lab/bruno•Updated Jan 9, 2025Jan 9, 2025

• bruno_paper

  Public
  Jupyter Notebook

  •00 forks in CompBio-Lab/bruno_paper•00 stars in CompBio-Lab/bruno_paper•99 issues in CompBio-Lab/bruno_paper•11 pull request in CompBio-Lab/bruno_paper•Updated Jan 7, 2025Jan 7, 2025

• Fentanyl_Multiomics

  Public
  HTML

  •00 forks in CompBio-Lab/Fentanyl_Multiomics•00 stars in CompBio-Lab/Fentanyl_Multiomics•66 issues in CompBio-Lab/Fentanyl_Multiomics•00 pull requests in CompBio-Lab/Fentanyl_Multiomics•Updated Aug 1, 2024Aug 1, 2024

• reproducible_analysis_demo_sccoda

  Public
  R

  •00 forks in CompBio-Lab/reproducible_analysis_demo_sccoda•00 stars in CompBio-Lab/reproducible_analysis_demo_sccoda•00 issues in CompBio-Lab/reproducible_analysis_demo_sccoda•11 pull request in CompBio-Lab/reproducible_analysis_demo_sccoda•Updated Oct 26, 2023Oct 26, 2023

• CompBio-Lab.github.io

  Public
  R

  •00 forks in CompBio-Lab/CompBio-Lab.github.io•00 stars in CompBio-Lab/CompBio-Lab.github.io•55 issues in CompBio-Lab/CompBio-Lab.github.io•00 pull requests in CompBio-Lab/CompBio-Lab.github.io•Updated Aug 7, 2023Aug 7, 2023

• geomx2rna

  Public
  Jupyter Notebook

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  MIT License

  •00 forks in CompBio-Lab/geomx2rna•00 stars in CompBio-Lab/geomx2rna•1010 issues in CompBio-Lab/geomx2rna•11 pull request in CompBio-Lab/geomx2rna•Updated Jun 2, 2023Jun 2, 2023