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@BiocomputeLab Biocompute Lab

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    20 repositories

    • biocomputelab.github.io

      Public
      Biocompute Lab Website
      HTML
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • AIEBaB-2026

      Public
      AI, Engineering Biology and Beyond 2026 Website
      HTML
      •0•1•0•0•Updated Oct 6, 2025Oct 6, 2025

    • NoRDe

      Public
      Nonrepetitive RNA Designer
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 26, 2025Aug 26, 2025

    • segment

      Public
      Flexible analysis tool for recombinase-based circuits
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • SIMPLIFE

      Public
      Shell
      •
      MIT License
      •0•2•0•0•Updated Jun 23, 2025Jun 23, 2025

    • segment-workflow

      Public
      Automated experimental workflow for carrying out the characterisation of recombinase-based parts and circuits.
      automationot-2recombinases
      automationot-2recombinases
      Python
      •
      MIT License
      •0•0•0•0•Updated May 28, 2025May 28, 2025

    • 18SNemaBase-EPI2ME

      Public
      Custom 18S NemaBase database for the wf-metagenomics EPI2ME workflow
      Julia
      •
      MIT License
      •0•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • chad

      Public
      Codon Harmonization And Diversification (CHAD)
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • sbolv-workshop

      Public
      Python
      •1•3•0•0•Updated Sep 11, 2023Sep 11, 2023

    • dna-library-analysis

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 27, 2022Oct 27, 2022

    • paraSBOLv

      Public
      A lightweight Python library designed to simplify the development of tools that render SBOL Visual diagrams.
      svgsbolsynbio
      svgsbolsynbiobiodesignsbolvsbol-visual
      Python
      •
      MIT License
      •5•17•3•1•Updated Aug 9, 2022Aug 9, 2022

    • MSc-Maddison

      Public
      Python
      •0•0•0•0•Updated Sep 13, 2021Sep 13, 2021

    • tx-valve-tools

      Public
      Computational models and tools for pooled characterisation of transcriptional valves
      Julia
      •
      MIT License
      •0•0•0•0•Updated Jun 23, 2021Jun 23, 2021

    • FORECAST

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Apr 16, 2021Apr 16, 2021

    • cheetah

      Public
      Real-time image analysis for control of cellular populations
      machine-learningreal-timecontrol
      machine-learningreal-timecontrolsynthetic-biologymicroscopyu-netcybergenetics
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 25, 2021Jan 25, 2021

    • curveball

      Public
      Predicting microbial growth in a mixed culture from growth curve data
      Python
      •
      Other
      •8•0•0•0•Updated Apr 10, 2020Apr 10, 2020

    • mctools

      Public
      Motif Clustering Tools for Complex Networks
      C
      •2•7•0•0•Updated Apr 5, 2018Apr 5, 2018

    • riboalloc

      Public
      A minimal model of ribosome allocation for synthetic biology
      MATLAB
      •
      MIT License
      •1•1•0•0•Updated Sep 20, 2016Sep 20, 2016

    • netevo-py

      Public
      NetEvo for Python
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 20, 2016Sep 20, 2016

    • teaching

      Public
      Teaching materials
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 22, 2016Feb 22, 2016
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