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Support pandas 3 with Sercol 1.0.3 (10.10.1) - #562

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iskandr merged 2 commits into
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deps/pandas-3
Sep 29, 2026
Merged

iskandr merged 2 commits into
mainfrom
deps/pandas-3

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@iskandr

@iskandr iskandr commented Sep 29, 2026 •

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Allow pandas 3 with Sercol 1.0.3 while retaining pandas 2 for supported older Python versions. The complete suite passes with pandas 3.0.6.

Fresh CI also exposed a stale explicit mouse-genome URL: use canonical HTTPS and the same full GTF filename as the installed release, and expand the transcript URL release number. Preserve the protein-effect assertions. Run the full test matrix for pull requests and default-branch pushes, avoiding duplicate feature-branch and release-tag runs.

Bumps Varcode to 10.10.1. Closes #561, closes #563, closes #514.

Validation: ./lint.sh; ./test.sh -q -n 2 (2,996 passed, pandas 3.0.6 / Sercol 1.0.3). CI verifies all supported Python versions and cross-annotator parity before release.

@iskandr iskandr changed the title Support pandas 3 with Sercol 1.0.3 (10.9.1) Support pandas 3 with Sercol 1.0.3 (10.10.1) Sep 29, 2026
@iskandr
iskandr merged commit 891b5e6 into main Sep 29, 2026
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