obrien-lab
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cg_simtk_protein_folding
cg_simtk_protein_folding PublicA toolkit for building CG model of protein/ribosome and MD simulation protocols for protein co- and post-translational folding
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Activation-Energy-Estimation-Workflow
Activation-Energy-Estimation-Workflow PublicA workflow to estimate activation free energy for a protein structure obtained from a coarse-grained simulation
Python 5
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Protein-entanglement-misfolding-determines-divergent-fates
Protein-entanglement-misfolding-determines-divergent-fates PublicScripts and input files to reproduce the work
Python 1
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P-site-A-site-pairs-analysis
P-site-A-site-pairs-analysis PublicData analysis workflow for the study on P-site A-site pairs
Jupyter Notebook
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P_and_A-site_pair_analysis_Complete_pipeline
P_and_A-site_pair_analysis_Complete_pipeline PublicJupyter Notebook 1
Repositories
- Protein-entanglement-misfolding-determines-divergent-fates Public
Scripts and input files to reproduce the work
obrien-lab/Protein-entanglement-misfolding-determines-divergent-fates’s past year of commit activity - cg_simtk_protein_folding Public
A toolkit for building CG model of protein/ribosome and MD simulation protocols for protein co- and post-translational folding
obrien-lab/cg_simtk_protein_folding’s past year of commit activity - Properties-governing-native-state-entanglements-and-relationships-to-protein-function Public Forked from jpetucci/Properties-governing-native-state-entanglements-and-relationships-to-protein-function
obrien-lab/Properties-governing-native-state-entanglements-and-relationships-to-protein-function’s past year of commit activity - Misfolded-ecPGK-structural-ensemble-consistent-with-LiP-MS-and-XL-MS-experiments Public
This is a webapp for visualizing the misfolded structual ensemble of ecPGK that exhibit consistent structual changes identified in LiP-MS and XL-MS.
obrien-lab/Misfolded-ecPGK-structural-ensemble-consistent-with-LiP-MS-and-XL-MS-experiments’s past year of commit activity - visualize_entanglements Public
This repository includes the interactive website (click the link below) that visualizes the example misfolded structures observed in our simulations that containes non-native entanglements. PDB structures of these misfolded structures are presented in the folder structure_pdb/.
obrien-lab/visualize_entanglements’s past year of commit activity - avoid-misfolding-into-non-covalent-lasso-entanglements-using-small-molecule-drugs Public
Code and data for the paper "It is theoretically possible to avoid misfolding into non-covalent lasso entanglements using small molecule drugs"
obrien-lab/avoid-misfolding-into-non-covalent-lasso-entanglements-using-small-molecule-drugs’s past year of commit activity
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