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add basic usage protocol and the usage of each script
add example figures 1st time
…shape-map.mutrate.pipeline.acrc.RiboSxitch.snakemake.py
…to sm.shape-map.mutrate.pipeline.acrc.hg_transcriptome.snakemake.py
…utrate.pipeline.acrc.snakemake.py
type errors
add references for human transcriptome
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