feat: added damidBind analysis - #2

Merged

niekwit merged 27 commits into

mainfrom

Jun 24, 2026

Commits on May 18, 2026

added post-deploy script to install damidBind when running with Conda only
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95310a6

Commits on Jun 19, 2026

v0.7.0, keep just one Dockerfile
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7e5614b
installation of damidBind
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6c9d8bc
Initial commit
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276d151
added damidBind rule
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277fc92
added damidBind
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0db9a39

Commits on Jun 23, 2026

do not update other packages when installing BioVenn of damidBind
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975ba68
added wget
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c02cc82
pin version to v1.1.1
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a73acac
damidBind working now with test data
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6a8fc68
Merge origin/main into damidbind, keeping damidbind changes

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claude
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50cad76
import resources as alias
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1ab38ac
snakefmt formatting
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5ed6d57
Remove damid.post-deploy.sh (damidBind moved to damidbind env)

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claude
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c7bfa05
enabled PE testing
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0bb461d
changed resource cpu counts to 1
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f9f7791
fixed broken counter
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7fe4ef9
disable pathway enrichment analysis for Dm data
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6473028
no more use of pipe()
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28ab5c7
2 threads for alignment
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962ad14
added pe test fastq files
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567695f
samples csv included for pe test
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ec68cc9
activated Perl peak calling for PE test data
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7ba147a
fixed bug with conda env cache
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62f82c6
use BiocManager::install()
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fcfdab9
free disk space after se test
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64b667a
lowered stringency for test pe
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39da6a8