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Benchmark ideal parameters for eggnog-mapper

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In nf-core/funcprofiler;

· nickp60 opened on Mar 19, 2026

Add merging/renaming functionality

enhancementNew feature or requestNew feature or request

Status: Open.

#23 In nf-core/funcprofiler;

· miraep8 opened on Mar 10, 2026

Should we support aligning reads to annotated contigs?

Status: Open.

#22 In nf-core/funcprofiler;

· miraep8 opened on Mar 10, 2026

Add support for custom shortBRED annotation/custom DBs?

enhancementNew feature or requestNew feature or request

Status: Open.

#19 In nf-core/funcprofiler;

· miraep8 opened on Mar 10, 2026

Decide whether to support long-reads

enhancementNew feature or requestNew feature or request

Status: Open.

#18 In nf-core/funcprofiler;

· nickp60 opened on Mar 9, 2026

Documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In nf-core/funcprofiler;

· nickp60 opened on Feb 25, 2026

Better tests: Humann

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In nf-core/funcprofiler;

· nickp60 opened on Feb 25, 2026

Better tests: fmhfunprofiler

enhancementNew feature or requestNew feature or request

Status: Open.

#7 In nf-core/funcprofiler;

· nickp60 opened on Feb 25, 2026

Submit HUMAnN local module to nf-core/modules

enhancementNew feature or requestNew feature or request

Status: Open.

#5 In nf-core/funcprofiler;

· nickp60 opened on Feb 25, 2026

Should containers contain databases?

Status: Open.

#3 In nf-core/funcprofiler;

· kescobo opened on Dec 12, 2025

Humann v4 output changes

Status: Open.

#2 In nf-core/funcprofiler;

· kescobo opened on Dec 12, 2025

Add module for rgi bwt

enhancementNew feature or requestNew feature or request

Status: Open.

#1 In nf-core/funcprofiler;

· vinisalazar opened on Nov 5, 2025