Use shared merge_inputs module - #112
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| include: "../shared/vendored/snakemake/init.smk" | ||
| include: "../shared/vendored/snakemake/config.smk" |
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Thanks for prototyping the modules @victorlin! I'm still a little wary of the abstraction of rules in this file, but at least the underlying rules are in the same repo. Will think on this a little more...
subrepo: subdir: "shared/vendored" merged: "c9497c4" upstream: origin: "https://github.com/nextstrain/shared" branch: "victorlin/merge-inputs" commit: "c9497c4" git-subrepo: version: "0.4.9" origin: "https://github.com/ingydotnet/git-subrepo" commit: "4f60dd7"
Previously, AUGUR_SEARCH_PATHS was automatically set upon inclusion of config.smk. An explicit call to a function is now needed.
Reduces the amount of workflow-specific code.
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shared/vendoredpulled from unmerged nextstrain/shared#79Only runs with unreleased changes from nextstrain/augur#2026
Description of proposed changes
Reduces the amount of workflow-specific code.
Related issue(s)
Follow-up to nextstrain/pathogen-repo-guide#108 (comment)
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