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Oct 25, 2023
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doc: ncbi datasets #211

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7 changes: 5 additions & 2 deletions ingest/README.md
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This is the ingest pipeline for mpox virus sequences.

## Software requirements

Follow the [standard installation instructions](https://docs.nextstrain.org/en/latest/install.html) for Nextstrain's suite of software tools.

## Usage

> NOTE: All command examples assume you are within the `ingest` directory.
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### GenBank data

GenBank sequences and metadata are fetched via NCBI Virus.
The exact URL used to fetch data is constructed by `vendored/ncbi-virus-url`.
GenBank sequences and metadata are fetched via [NCBI datasets](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/).

## `ingest/vendored`

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