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j23414 merged 1 commit into from
Jan 20, 2024
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Update zika instructions #152

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5 changes: 2 additions & 3 deletions builds/ZIKA.md
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## Ingest data from NCBI GenBank

Navigate to the nextstrain/zika repository and [follow the instructions for ingest](https://github.com/nextstrain/zika/tree/persephone/ingest).
Navigate to the nextstrain/zika repository and [follow the instructions for ingest](https://github.com/nextstrain/zika/tree/main/ingest).

```
git clone https://github.com/nextstrain/zika.git
cd zika
git checkout persephone
cd ingest
nextstrain build .
```
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## Run zika workflow

See instructions at https://github.com/nextstrain/zika/tree/persephone/phylogenetic
See instructions at https://github.com/nextstrain/zika/tree/main/phylogenetic

```
cd ../phylogenetic
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