Copy ingest - #13

Merged

j23414 merged 8 commits into

mainfrom

Dec 5, 2023

Commits on Nov 7, 2023

Ingest: Copy ingest from mpox repo
j23414
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11b67b1
git subrepo clone (merge) https://github.com/nextstrain/ingest ingest/vendored
j23414
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71d2f56
Ingest: Replace mpox text and taxon id with dengue
j23414
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b64198c
Remove Nextclade related rules
j23414
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50e6083
Remove unused reverse column
j23414
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e1007c7
Clear pathogen specific user provided annotations and rules
j23414
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109f2eb

Commits on Nov 8, 2023

eradicate our confounding of release and submission

j23414
and
corneliusroemer
committed
94b0113

Commits on Dec 5, 2023

NCBI Dataset field name transformations
j23414
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2684e24