Skip to content

Add schema def for unaligned sequences - #2037

Closed
victorlin wants to merge 1 commit into
masterfrom
victorlin/subsample-config-schema
Closed

Add schema def for unaligned sequences#2037
victorlin wants to merge 1 commit into
masterfrom
victorlin/subsample-config-schema

Conversation

@victorlin

@victorlin victorlin commented Aug 11, 2026

Copy link
Copy Markdown
Member

Description of proposed changes

Some workflows use unaligned sequences as input to augur subsample. In this case, proximal samples will not work properly. This schema def makes it easier for workflows to guard against configs with proximal samples.

Related issue(s)

nextstrain/rsv#103 (comment)

Checklist

@victorlin victorlin self-assigned this Aug 11, 2026
Some workflows use unaligned sequences as input to augur subsample. In
this case, proximal samples will not work properly. This schema def
makes it easier for workflows to guard against configs with proximal
samples.
@victorlin
victorlin force-pushed the victorlin/subsample-config-schema branch from 9c16031 to fc86867 Compare August 11, 2026 19:07
Comment thread devel/regenerate-subsample-schema
@victorlin victorlin closed this Aug 12, 2026
@victorlin
victorlin deleted the victorlin/subsample-config-schema branch August 12, 2026 18:05
@victorlin victorlin mentioned this pull request Aug 20, 2026
5 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants