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docs: fix AUGUR_SEARCH_PATH precedence order #2027

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joverlee521 merged 1 commit into from
Jul 13, 2026
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docs: fix AUGUR_SEARCH_PATH precedence order #2027

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2 changes: 1 addition & 1 deletion docs/usage/envvars.rst
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Expand Up @@ -11,7 +11,7 @@ These can be especially useful in the context of an entire pipeline or workflow
If set, ``augur subsample`` will search these directories for relative filepaths specified in the config file.
Multiple directories can be set by separating them with colons (e.g., ``/path/one:/path/two``).

This takes precedence over the ``--search-paths`` command line argument.
The ``--search-paths`` command line argument takes precedence over this environment variable.

.. envvar:: AUGUR_DEBUG

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