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mwhall edited this page Oct 22, 2014 · 4 revisions

AXIOME2: Automation, eXtension, and Integration of Microbial Ecology

AXIOME2 is the successor to the AXIOME software. It is a complete re-write of the original in order to better meet the expanded goals of the project. The improvements over the old version include:

  • Integrated user interface, removing the need for the separate axiometic project
  • Easier creation of plugins
  • More customizable workflows, allowing quicker creation/removal of intermediate steps
  • Fully programmed in Python, removing Vala compilation issues
  • Better organization of output files

AXIOME2 is software to manage microbial ecology marker gene study pipelines. It integrates heavily with the QIIME toolkit. Support for Mothur and other tools is in development. To suggest an analysis or tool be added to AXIOME, please add an issue here on GitHub.

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