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1. emase emase Public

   Forked from churchill-lab/emase

   EMASE: Expectation-Maximization algorithm for Allele Specific Expression

   Python 2

2. ibd-pathology ibd-pathology Public

   Inflamed-vs-healed heatmaps for IBD colon biopsies: frozen pathology foundation-model (H-optimus-0) embeddings + attention-MIL, honestly validated leave-patients-out on public CC0 data. Research pr…

   Python

3. scembed scembed Public

   Single-cell embedding with autoencoders

   Python

4. scBASE scBASE Public

   Forked from churchill-lab/scBASE

   A set of tools for accurate quantitation of single-cell allele-specific expression

   Python

5. proteoem proteoem Public

   Protein and proteoform quantification from single-molecule affinity traces, by EM over calibrated probe-binding likelihoods

   Python 1