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Document addMDS rarefaction feature retention - #883

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fix/824-addmds-rarefaction
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Document addMDS rarefaction feature retention#883
0xMuluh wants to merge 1 commit into
develfrom
fix/824-addmds-rarefaction

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@0xMuluh

@0xMuluh 0xMuluh commented Sep 1, 2026

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Summary

  • retain all features when rarefying in the addMDS example
  • explain the interaction between ntop and rarefaction depth

Validation

  • git diff --check
  • affected R chunk parses successfully

Closes #824

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addMDS drops smallest sample when sample = min(colSums(assay(tse, "counts")))

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