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AIRR-C v2 ingest path has no custom-field passthrough (unlike PCP/Olmsted JSON)
enhancementNew feature or requestNew feature or requestStatus: Open.#51 In matsengrp/olmsted-cli;Update stale airr-standards submodule pin, or remove the dead official-schema validation code
maintenanceNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureStatus: Open.#50 In matsengrp/olmsted-cli;Unify mean_mut_freq / tree-metrics computation into one post-conversion pass
maintenanceNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureStatus: Open.#41 In matsengrp/olmsted-cli;Publish olmsted-cli to PyPI and move beyond alpha status
maintenanceNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureStatus: Open.#30 In matsengrp/olmsted-cli;Streaming finalize: replicate auto-mutation-demotion from generate_default_config
maintenanceNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureNon-feature upkeep: cleanup, migration, tooling/release housekeeping, test infrastructureStatus: Open.#28 In matsengrp/olmsted-cli;Compute clone-level aggregates from mutation-level data
enhancementNew feature or requestNew feature or requestStatus: Open.#14 In matsengrp/olmsted-cli;Publish standalone schema files for the Olmsted AIRR extensions
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#11 In matsengrp/olmsted-cli;