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IndexError in mut_param_dataset_correlation for single-replicate cells
stubGoal-only draft — needs brainstorming → /spec <N> before workGoal-only draft — needs brainstorming → /spec <N> before workStatus: Open.#319 In matsengrp/multidms;Write the three missing docs pages (biophysical model, BA.1 fitting example, simulation validation)
stubGoal-only draft — needs brainstorming → /spec <N> before workGoal-only draft — needs brainstorming → /spec <N> before workStatus: Open.#318 In matsengrp/multidms;Emit manuscript Figure 2 and SI S1-S5 from the simulation pipeline
stubGoal-only draft — needs brainstorming → /spec <N> before workGoal-only draft — needs brainstorming → /spec <N> before workStatus: Open.#316 In matsengrp/multidms;Spike prep diverges from legacy: in-frame codon deletions dropped, replicate subset differs
stubGoal-only draft — needs brainstorming → /spec <N> before workGoal-only draft — needs brainstorming → /spec <N> before workStatus: Open.#313 In matsengrp/multidms;mut_type() mislabels in-frame codon deletions as nonsynonymous
stubGoal-only draft — needs brainstorming → /spec <N> before workGoal-only draft — needs brainstorming → /spec <N> before workStatus: Open.#312 In matsengrp/multidms;- Status: Open.#293 In matsengrp/multidms;
Re-express fitted 0.4.0 spike model in PR #164 (main) form; verify Huber loss is preserved (params approximated from ge_fits.png)
questionFurther information is requestedFurther information is requestedwontfixThis will not be worked onThis will not be worked onStatus: Open.#281 In matsengrp/multidms;Concurrent (single-solve) fitting for multidms
questionFurther information is requestedFurther information is requestedwontfixThis will not be worked onThis will not be worked onStatus: Open.#243 In matsengrp/multidms;- Status: Open.#192 In matsengrp/multidms;
- Status: Open.#179 In matsengrp/multidms;
A ridge penalty that doesn't bias toward WT
enhancementNew feature or requestNew feature or requestquestionFurther information is requestedFurther information is requestedwontfixThis will not be worked onThis will not be worked onStatus: Open.#51 In matsengrp/multidms;