Midlige Tutorial 11#6
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lyy005
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Dec 11, 2017
| ./Hammer/binaries/hmmsearch --tblout $file.transporter.hits transporter.hmm $file | ||
| done | ||
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| cat Problem1/*.hits | grep -v "#" | awk '{print $1,$3,$5}' | sed -E 's/tr\|[A-Z0-9]+\|[A-Z0-9]+_9//' > results.txt |
lyy005
reviewed
Dec 11, 2017
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| for line in sequences: | ||
| motif1= re.match(AKKPRVZE,str(sequences)) | ||
| motif2- re.match(AAQWWRNYGG,str(sequences)) |
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motif1= re.match("AKKPRVZE",str(line))
motif2= re.match("AAQWWRNYGG",str(line))
-0.1 pts
lyy005
reviewed
Dec 11, 2017
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| sequences=open("motifsort.fasta","r") | ||
| motif1file=open(motif1.txt,"w") | ||
| motif2file=open(motif2.txt,"w") |
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motif1file=open("motif1.txt","w")
motif2file=open("motif2.txt","w")
others=open("nonMotif.txt","w")
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