Corley-Kilgore-McCown Exercise 11 Submission#3
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kkilgoreND wants to merge 13 commits into
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…s working for you guys
lyy005
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Dec 11, 2017
| ../../../hmmer-3.1b2-cygwin64/binaries/./hmmsearch Problem1/sporecoat.ref.hmm all-files.fasta > sporecoat.hmms | ||
| ../../../hmmer-3.1b2-cygwin64/binaries/./hmmsearch Problem1/transporter.ref.hmm all-files.fasta > transporter.hmms | ||
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You need to generate a single results file that contains proteome, HMM result and e-value
cat *.hmms | grep -v "#" | awk '{print $1,$3,$5}' | sed -E 's/tr|[A-Z0-9]+|[A-Z0-9]+_9//g' > hmmOut.txt
-0.1
lyy005
reviewed
Dec 11, 2017
| out2.close() | ||
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