Zoe Soren#5
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zoeloh wants to merge 5 commits into
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lyy005
reviewed
Nov 27, 2017
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| g1=ggplot(modelOutput,aes(x="time",y="r1"))+geom_line()+geom_line(aes(y="R2"))+geom_line(aes(y="R3"))+geom_line(aes(y="R4"))+geom_line(aes(y="R5")) | ||
| g1+theme_classic() | ||
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Owner
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This code looks good except R2 should be r1.
Also, for plotting, you can add color for example:
ggplot(modelOutput,aes(x="time",y="r1",color="1"))+geom_line()+geom_line(aes(x="time",y="r2",color="50"))
lyy005
reviewed
Nov 27, 2017
| g3=ggplot(modelOutput,aes(x="time",y="N1"))+geom_line()+geom_line(aes(y="N2"))+geom_line(aes(y="N3")) | ||
| g3+theme_classic() | ||
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| #We dont know how to get all the plots outputted, but the code is there to make them all. We asked stuart but he didn't help us with this specifically |
Owner
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Do you mean the ggplot command is not working? I added some comments above. Let me know if you still have any questions. In general, you guys did a good job on this question!
lyy005
reviewed
Nov 27, 2017
| prevalence.sort() | ||
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| print("B: " + str(listb[i]) + " y: " + str(listy[i])) | ||
| print("Max incidence: " + str(incidence[0])) |
Owner
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Maximum value should be incidence[-1]
lyy005
reviewed
Nov 27, 2017
| bscReproduction = listb[i] * (modelOutput.loc[499, "S"] + modelOutput.loc[499, "I"] + modelOutput.loc[499, "R"]) / listy[i] | ||
| print("Basic reproduction number: " + str(bscReproduction)) | ||
| print("############################################") | ||
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