AMoNet package V1

Author: Loic Verlingue Date: 2019-10-30

Installation

Welcome to AMoNet R package.

You can install AMoNet R package directly from Rstudio with the following steps.

To download it from github or gitlab.curie.fr (be sure to have a Curie intranet connection), you may need to install the packages with dependencies in AMoNet first: check warnings.

Otherwise, you can install AMoNet package from source file.

From gitlab or github

Within the install_git() function you can:

*with gitlab Change the user and password with your own.

library(devtools)
install_git("https://user:password@gitlab.curie.fr/lverling/amonet.git", dependencies = TRUE)
library(AMoNet)

*with github

library(devtools)
install_git("https://github.com/loicverlingue/AMoNet.git", dependencies = TRUE)
library(AMoNet)

From source file

# Download source package: AMoNet_0.1.0.tar.gz 
install.packages("path_to_file/AMoNet_0.1.0.tar.gz", repos = NULL, type="source")

From CRAN

under testing

Usage

A step by step introduction to basic AMoNet usage are provided in the vignettes. To show vignettes:

• If you have installed AMoNet from source just run

browseVignettes("AMoNet")

• Or build vignettes yourself with

build_vignettes("AMoNet")
browseVignettes("AMoNet")

• Dowload vignettes in Rmarkdown format at https://gitlab.curie.fr/lverling/amonet/tree/master/vignettes or https://github.com/loicverlingue/AMoNet/tree/master/vignettes and open it with R studio.