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.ipynb_checkpoints
.ipynb_checkpoints
 
 
505
505
 
 
F1
F1
 
 
F2
F2
 
 
coverage_rep_RNAseq_test_files/figure-html
coverage_rep_RNAseq_test_files/figure-html
 
 
parent
parent
 
 
read_count
read_count
 
 
use_Upendra_data_my_SNP_calling_pipeline
use_Upendra_data_my_SNP_calling_pipeline
 
 
.GWAS_505_late_silique.R.swp
.GWAS_505_late_silique.R.swp
 
 
.Rhistory
.Rhistory
 
 
.duplicated_file_2.swp
.duplicated_file_2.swp
 
 
.nfs00018000101ece3700000a6c
.nfs00018000101ece3700000a6c
 
 
.split_then_calc_depth.sh.swp
.split_then_calc_depth.sh.swp
 
 
505_late_silique.Rmd
505_late_silique.Rmd
 
 
QTL_analysis_flipped_C0508.Rmd
QTL_analysis_flipped_C0508.Rmd
 
 
README.md
README.md
 
 
SNP.not.poly.Rdata
SNP.not.poly.Rdata
 
 
Sample_aligned_HQ_reads
Sample_aligned_HQ_reads
 
 
Untitled.ipynb
Untitled.ipynb
 
 
bunchrun_kallisto.sh
bunchrun_kallisto.sh
 
 
candidate_gene_fatty_acid.Rmd
candidate_gene_fatty_acid.Rmd
 
 
clean_space.sh
clean_space.sh
 
 
coverage_rep_RNAseq_test.Rmd
coverage_rep_RNAseq_test.Rmd
 
 
coverage_rep_RNAseq_test.html
coverage_rep_RNAseq_test.html
 
 
coverage_rep_RNAseq_test.md
coverage_rep_RNAseq_test.md
 
 
download_SRR.sh
download_SRR.sh
 
 
duplicated_file
duplicated_file
 
 
extract_inf.py
extract_inf.py
 
 
extract_inf.sh
extract_inf.sh
 
 
extract_unique_mapping_reads_2.sh
extract_unique_mapping_reads_2.sh
 
 
file_transfer.Rmd
file_transfer.Rmd
 
 
ftp_file_transfer.sh
ftp_file_transfer.sh
 
 
function_BnRNAseq.R
function_BnRNAseq.R
 
 
get_common_SNP.sh
get_common_SNP.sh
 
 
make_summary_report.sh
make_summary_report.sh
 
 
mapping_comparison_A_B_C_subgenome.Rmd
mapping_comparison_A_B_C_subgenome.Rmd
 
 
merge_trim_mapping.sh
merge_trim_mapping.sh
 
 
nano.save
nano.save
 
 
overlay_sig_loci_Erucic_Oleic.Rmd
overlay_sig_loci_Erucic_Oleic.Rmd
 
 
pheno_trait_analysis.Rmd
pheno_trait_analysis.Rmd
 
 
sam_to_bam.sh
sam_to_bam.sh
 
 
subset_by_chromosome.sh
subset_by_chromosome.sh
 
 
屏幕快照 2017-05-05 03.44.16 PM.png
屏幕快照 2017-05-05 03.44.16 PM.png
 
 

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KIAT

Ruijuan Li's repository for the KIAT project

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