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Merged
MatthewThe merged 2 commits into from
Jul 2, 2026
Merged

Merge develop into main (v0.9.1) #35

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112e71b
Add unit test for the new Probability column functionality
MatthewThe Jul 2, 2026
da71b42
Ready for v0.9.1
MatthewThe Jul 2, 2026
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9 changes: 5 additions & 4 deletions tests/unit_tests/parsers/test_fragpipe.py
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Original file line number Diff line number Diff line change
@@ -1,5 +1,3 @@
# Generation assisted by CodiumAI

from picked_group_fdr.parsers.fragpipe import parse_fragpipe_psm_file
from picked_group_fdr.scoring_strategy import ProteinScoringStrategy

Expand All @@ -10,7 +8,10 @@
class TestParseFragpipePsmFile:

# correctly parses a well-formed psm.tsv file with all required columns
def test_correctly_parses_well_formed_psm_tsv(self, mocker):
@pytest.mark.parametrize(
"probability_column", ["PeptideProphet Probability", "Probability"]
)
def test_correctly_parses_well_formed_psm_tsv(self, mocker, probability_column):
# Mock the csv reader
mocker.patch(
"picked_group_fdr.parsers.tsv.get_tsv_reader",
Expand All @@ -22,7 +23,7 @@ def test_correctly_parses_well_formed_psm_tsv(self, mocker):
"Peptide",
"Modified Peptide",
"SpectralSim",
"PeptideProphet Probability",
probability_column,
"Protein",
"Mapped Proteins",
],
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