code review pull request

clustering/SR-MCL_package/LICENSE

@@ -0,0 +1,48 @@
+SR-MCL (Soft Regularized Markov Clustering) - Version 1.0
+
+Copyright 2012, The Ohio State University. 
+Portions Copyright 1997, Regents of the University of Minnesota.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or
+without modification, are
+permitted provided that the following conditions are met:
+
+1. Redistributions, with or without modifications, of source 
+code must retain the above
+copyright notice, this list of conditions and the following
+disclaimer.
+
+2. Redistributions, with or without modifications, in binary form 
+must reproduce the above
+copyright notice, this list of conditions and the following
+disclaimer
+in the documentation and/or other materials provided with the
+distribution.
+
+3. The names of the Ohio
+State University, the University of Minnesota and
+their contributors may not be used to endorse or promote products
+derived from this software without specific prior permission. 
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
+FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
+INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
+USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
+TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
+USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
+DAMAGE.
+

clustering/SR-MCL_package/Lib/Makefile

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+include ../Makefile.in
+
+#INCLUDES = -I../hipr/ -I. 
+INCLUDES = -I. 
+
+CFLAGS = $(COPTIONS) $(OPTFLAGS) $(INCLUDES)
+LD = $(CC) -L. 
+
+
+OBJS = coarsen.o match.o ccgraph.o memory.o \
+       util.o metrics.o merge.o\
+       graph.o io.o \
+       subgraphs.o \
+       myqsort.o \
+       mlmcl.o mclbase.o mclutils.o rmcl.o \
+       srmcl.o 
+
+.c.o:
+	$(CC) $(CFLAGS) -c $*.c
+
+../libmlrmcl.a: $(OBJS) *.h 
+	$(AR) $@ $(OBJS)
+	$(RANLIB) $@
+
+clean:
+	rm -f *.o
+
+realclean:
+	rm -f *.o ; rm -f ../libmlrmcl.a