feat(analysis): add validated Gwyddion parity capabilities - #78

Merged

kegouro merged 83 commits into

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feat/gwyddion-leveling-parity

Aug 3, 2026

Commits on Jul 31, 2026

test(leveling): preserve channel identity during plane fit
kegouro
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d3061e8
feat(leveling): add strict zero-mean leveling
kegouro
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50ee155
refactor(leveling): centralize strict data validation
kegouro
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435da3e
feat(leveling): add strict minimum-zero leveling
kegouro
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9e540f5
feat(leveling): add strict vertical shifting
kegouro
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8b29b58
feat(leveling): add masked plane fitting
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97ca58e
feat(leveling): add three-point plane leveling
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d9a94e7
feat(leveling): add masked polynomial background fitting
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76ed1c8
feat(leveling): add masked robust row alignment
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318f1fe
feat(leveling): add polynomial row alignment
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f00b0ab
feat(leveling): add robust row-difference alignment
kegouro
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8f871c7
feat(leveling): add flat-segment row matching
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5488eb4
feat(leveling): add robust modal row alignment
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8eaedd8
feat(leveling): add facet-based row tilt correction
kegouro
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77b9ffc
feat(leveling): add iterative two-dimensional facet leveling
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37b5cb7
feat(core): add physical geometry primitives
kegouro
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06d6342
feat(leveling): add physical level rotation
kegouro
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6c72ac5
build(core): promote scipy to required numerical dependency
kegouro
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c9f58cd
fix(build): remove stale grains extra reference
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09d7a01
fix(build): align grains guidance with required scipy
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e930da6
test(core): isolate Bruker GUI import assertion
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c697ea8
test(gui): disable cyclic GC during Qt test sessions
kegouro
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21e2963
feat(background): add physical arc-revolution leveling
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070c2c2
fix(background): harden arc-revolution option validation
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d718ecf

Commits on Aug 1, 2026

feat(background): add physical sphere-revolution leveling
kegouro
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d0825e0
feat(background): add Gwyddion-compatible median leveling
kegouro
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d2bcdd1
feat(background): add structured background results
kegouro
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5ae6c08
feat(background): add physical rolling-ball estimation
kegouro
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66ea55c
feat(background): add structured polynomial estimation
kegouro
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a00f3d5
feat(analysis): add matrix-free P-spline surface core
kegouro
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776e1cb
fix(analysis): harden P-spline numeric inputs
kegouro
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fcca54a
feat(background): add P-spline estimation adapter
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6697fd0
feat(background): add P-spline background removal
kegouro
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a1ed0c1
feat(background): add structured P-spline analysis
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5eb52da
feat(analysis): export P-spline background API
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7556e9b
test(validation): cross-check P-spline reconstruction with FITPACK
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7610d69
feat(analysis): add Gwyddion-compatible height distribution
kegouro
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00b46a5
feat(analysis): add base peak window selection
kegouro
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9893001
feat(analysis): add cross-validated base peak fitting
kegouro
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37aa825
feat(analysis): compose base peak estimation
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0e679f4
feat(analysis): add cross-validated facet plane estimation
kegouro
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115b565
feat(analysis): add Flatten Base facet stage
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b268ad8
refactor(analysis): extract polynomial surface solver
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954a7b8
feat(analysis): add Flatten Base mask growth
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280b971
feat(analysis): add Flatten Base automatic mask
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129d13f
feat(analysis): add cross-validated Flatten Base polynomial iteration
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62d0d59
feat(analysis): add Flatten Base polynomial stage
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ae8f2ee
fix(analysis): align Flatten Base polynomial control flow
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742e1c8
feat(analysis): compose complete Flatten Base pipeline
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223aabe
feat(analysis): match Gwyddion Flatten Base fitting semantics
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af4db87
docs(science): record Flatten Base Gwyddion cross-validation
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6b7ee83
feat(analysis): add Gwyddion arc kernel primitives
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960bc7f
feat(analysis): implement Gwyddion horizontal arc kernel
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84b22bb
feat(analysis): validate Gwyddion arc direction semantics
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c0e4fc1
docs(science): specify Gwyddion arc compatibility
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38d0955
feat(analysis): expose Gwyddion arc background API
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c693fc9

Commits on Aug 2, 2026

feat(analysis): match Gwyddion Sphere Revolution semantics
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c466e7a
style(tests): normalize Sphere Revolution test EOF
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2becd72
test(validation): freeze Gwyddion Median Background evidence
kegouro
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818dbd3
feat(analysis): add Gwyddion median background kernel
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a53c3bb
feat(analysis): expose Gwyddion median background API
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ed5c837
docs(validation): close Gwyddion Median Background parity
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7894560
test(validation): freeze Gwyddion flat-disc morphology evidence
kegouro
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2ba366e
feat(analysis): add Gwyddion flat-disc morphology kernel
kegouro
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05c5ae4
feat(analysis): expose Gwyddion flat-disc morphology API
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1b2d081
docs(validation): close Gwyddion flat-disc morphology parity
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c0de811
test(validation): freeze Gwyddion Path Level evidence
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d3566ce
feat(leveling): add Gwyddion Path Level kernel
kegouro
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4ead95b

Commits on Aug 3, 2026

feat(leveling): expose Gwyddion Path Level API
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15089f3
docs(validation): close Gwyddion Path Level parity
kegouro
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08e343f
feat(compat): add Gwyddion source audit foundation
kegouro
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da987fc
test(validation): freeze Gwyddion Align Rows statistics evidence
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bfea4d6
feat(leveling): add Gwyddion Align Rows statistics engine
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a6ca1ef
feat(leveling): expose Gwyddion Align Rows statistics API
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6886faf
docs(validation): close Gwyddion Align Rows statistics parity
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7170938
fix(leveling): preserve legacy align_rows contract
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02c609d
fix(types): restore strict mypy compliance
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f55be0f
style: format Gwyddion parity implementation
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704562b
test(compat): remove local source-tree dependency
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96cf983
chore(validation): sanitize frozen evidence provenance
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710d8f5
docs(validation): remove stale paths and guidance
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7b127b5
merge: incorporate content-addressed docs provenance
kegouro
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2e065a2
fix(docs): synchronize manual provenance
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6d74d3b