© Vidarium, 2017
This folder contains the necessary files to replicate the results presented in the following paper:
de la Cuesta-Zuluaga J, Corrales-Agudelo V, Carmona JA, Abad JM, Escobar JS. Body size phenotypes comprehensively assess cardiometabolic risk and refine the association between obesity and gut microbiota. International Journal of Obesity. DOI: 10.1038/ijo.2017.281
Microbio_BSP_analyses.R: R script for reproducing the analyses presented in the paper.
lefse_abnormalities*.txt: datasets to run Lefse (https://huttenhower.sph.harvard.edu/galaxy/)
read.newick.R: source code from read.newick, only necessary if you have problems with the phytools package
All other files are necessary for running Microbio_BSP_analyses.R.
Contact: jsescobar@serviciosnutresa.com