Analytic Attributes of the 16S rRNA Gene Sequencing Methodology for Human Gut Microbiota Characterization

Diego A. Rivera, Oscar J. Lara-Guzmán, N. Andrea Villota-Salazar, Jelver A. Sierra, Katalina Muñoz-Durango, Juan S. Escobar

year: 2025

doi:

This repo contains the R script and data to reproduce the results reported in the above paper (Rivera et al. 2025).

Name		Name	Last commit message	Last commit date
README.md		README.md
atributos16S.2024.metadata.xlsx		atributos16S.2024.metadata.xlsx
atributos16S.metadata.xlsx		atributos16S.metadata.xlsx
atributos_16S.otus		atributos_16S.otus
attributes_16SrRNA.Rmd		attributes_16SrRNA.Rmd
colibri.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.opti_mcc.0.03.rep.unaligned.gtdb_taxonomy.tsv		colibri.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.opti_mcc.0.03.rep.unaligned.gtdb_taxonomy.tsv
colibri.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.opti_mcc.shared		colibri.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.opti_mcc.shared
dic2022.trim.contigs.good.unique.good.filter.unique.precluster.pick.pick.opti_mcc.0.03.rep.unaligned.gtdb_taxonomy.tsv		dic2022.trim.contigs.good.unique.good.filter.unique.precluster.pick.pick.opti_mcc.0.03.rep.unaligned.gtdb_taxonomy.tsv

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