Issues

• model card missing

  jerryji1993/DNABERT#132 · Filter by author sorobedio opened on Feb 2, 2026

• When calculating DNA sequence embeddings in batches, should they be normalized based on length?

  jerryji1993/DNABERT#130 · Filter by author zxzhang8 opened on Nov 21, 2025

• Clarification on DNABERT Pre-training Data Format

  jerryji1993/DNABERT#129 · Filter by author vkaz39 opened on Sep 4, 2025

• Unable to download DNABERT pre-trained model

  jerryji1993/DNABERT#128 · Filter by author Citugulia40 opened on Jul 8, 2025

• Torch Version

  jerryji1993/DNABERT#126 · Filter by author dbaker1990 opened on Dec 20, 2024

• Using DNABert to predict expression

  jerryji1993/DNABERT#125 · Filter by author saninta0212 opened on Sep 19, 2024

• Understand the attention design

  jerryji1993/DNABERT#124 · Filter by author HelloWorldLTY opened on Sep 17, 2024

• Which model to use for genomic variants analysis?

  jerryji1993/DNABERT#122 · Filter by author nc1m opened on Jul 16, 2024
  1

• Installation Issues.

  jerryji1993/DNABERT#120 · Filter by author CodelyUnicorn opened on May 10, 2024

• what is the masking ratio

  jerryji1993/DNABERT#119 · Filter by author abhidipbhattacharyya opened on May 8, 2024

• Release pretraining data?

  jerryji1993/DNABERT#118 · Filter by author leannmlindsey opened on May 6, 2024
  1

• Request for Detailed Information on Training the Tokenizer

  jerryji1993/DNABERT#117 · Filter by author a-green-hand-jack opened on Mar 14, 2024
  1

• the seq longer than 512

  jerryji1993/DNABERT#113 · Filter by author SSHH007 opened on Oct 7, 2023

• install packages using pip

  jerryji1993/DNABERT#112 · Filter by author lingfengxu opened on Oct 3, 2023
  2

• Shape of atten.npy

  jerryji1993/DNABERT#111 · Filter by author salehsereshkiucr opened on Aug 25, 2023

• Pretraining error

  jerryji1993/DNABERT#109 · Filter by author liu3zhenlab opened on Jul 10, 2023

• attention maps generated in pre-training stage or fine-turning stage

  jerryji1993/DNABERT#108 · Filter by author Shicheng-Guo opened on Jul 6, 2023

• AssertionError in kmer2seq for motif search

  jerryji1993/DNABERT#105 · Filter by author Vejni opened on May 24, 2023

• How to get the high attention regions of a given sequence.

  jerryji1993/DNABERT#104 · Filter by author ytye2010 opened on May 18, 2023

• Importing error of Transformers

  jerryji1993/DNABERT#103 · Filter by author Rofidagamal opened on May 3, 2023
  4

• There is a bug about attention mask in source code

  jerryji1993/DNABERT#102 · Filter by author Jason941 opened on Apr 27, 2023

• How can I create my own processor?

  jerryji1993/DNABERT#101 · Filter by author dominiclopez391 opened on Apr 26, 2023
  1

• How Can I track model loss and accuracy of each epoch during fine-tuning, to make sure model is stable?

  jerryji1993/DNABERT#99 · Filter by author XuanrZhang opened on Apr 13, 2023

• early_stop not being triggered?

  jerryji1993/DNABERT#98 · Filter by author jackievaleri opened on Apr 6, 2023

• Changing max_seq_length does not update max_length in config.json

  jerryji1993/DNABERT#97 · Filter by author jackievaleri opened on Apr 4, 2023